comparison extractSplitReads_BwaMem.xml @ 1:a20ac5d90c16 draft default tip

planemo upload commit 0066847e0ac19632c3091ac3148069de3bb3855f-dirty

0:839c219ab0aa

<tool id="extractsplitreads_bwamem"
      name="Extract Split Reads"
      version="0.1.0">

    <description>from bwaMEM (part of lumpy-sv)</description>

    <requirements>
        <requirement type="package" version="0.2.14a">lumpy-sv</requirement>
    </requirements>

    <!-- Not sure yet how to call the command if the lumpy-sv package in bioconda doesn't put the script in an executable location on PATH -->

    <version_command>extractSplitReads_BwaMem | grep ^extractSplitReads_BwaMem | cut -d v -f 2</version_command>

    <command detect_errors="aggressive">
        <![CDATA[

1:a20ac5d90c16

<tool id="extractSplitReads_BwaMem"
      name="Extract Split Reads"
      version="0.1.0">

    <description>from bwaMEM (part of lumpy-sv)</description>

    <requirements>
        <requirement type="package" version="0.2.14a">lumpy-sv</requirement>
    </requirements>

    <version_command>extractSplitReads_BwaMem | grep ^extractSplitReads_BwaMem | cut -d v -f 2</version_command>

    <command detect_errors="aggressive">
        <![CDATA[