Mercurial > repos > hepcat72 > lumpyexpress
comparison lumpyexpress.xml @ 10:0392990e26d8 draft
planemo upload for repository https://github.com/hepcat72/robs_galaxy_tools/tree/master/tools/lumpyexpress commit a63285f3a50f6767f61bcf9efd16364f3f6d7abc
| author | hepcat72 |
|---|---|
| date | Fri, 24 May 2019 11:57:32 -0400 |
| parents | 48461adb2e6a |
| children | 1adcc5678f70 |
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| 9:48461adb2e6a | 10:0392990e26d8 |
|---|---|
| 1 <tool id="lumpyexpress_0_1" name="lumpyexpress" version="0.1.7"> | 1 <tool id="lumpyexpress_0_1" name="lumpyexpress" version="0.1.8"> |
| 2 <description>Single or paired end SV detection</description> | 2 <description>Single or paired end SV detection</description> |
| 3 | 3 |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="2.7">python</requirement> | 5 <requirement type="package" version="2.7">python</requirement> |
| 6 <requirement type="package" version="0.8.3">pysam</requirement> | 6 <requirement type="package" version="0.8.3">pysam</requirement> |
| 7 <requirement type="package" version="1.13.1">numpy</requirement> | 7 <requirement type="package" version="1.13.1">numpy</requirement> |
| 8 <requirement type="package" version="0.2.13">lumpy-sv</requirement> | 8 <requirement type="package" version="0.2.13">lumpy-sv</requirement> |
| 9 <requirement type="package" version="1.9">samtools</requirement> | 9 <requirement type="package" version="1.9">samtools</requirement> |
| 10 <!-- No conda package for MacOS, but I have it installed on my mac <requirement type="package" version="0.1.24">samblaster</requirement> --> | 10 <requirement type="package" version="0.1.24">samblaster</requirement> |
| 11 <requirement type="package" version="0.6.5">sambamba</requirement> | 11 <requirement type="package" version="0.6.5">sambamba</requirement> |
| 12 <requirement type="package" version="4.2.1">gawk</requirement> | 12 <requirement type="package" version="4.2.1">gawk</requirement> |
| 13 </requirements> | 13 </requirements> |
| 14 | 14 |
| 15 <version_command><![CDATA[ | 15 <version_command><![CDATA[ |