Mercurial > repos > hepcat72 > lumpyexpress

comparison lumpyexpress.xml @ 3:d637435b1227 draft

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planemo upload for repository https://github.com/hepcat72/robs_galaxy_tools/tree/master/tools/lumpyexpress commit a82cefcab2be9f47447d3e49b6ec71a22a12f989
author hepcat72
date Thu, 25 Oct 2018 14:12:43 -0400
parents bfd745cf84c2
children ea7edefc72c3
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2:bfd745cf84c2 3:d637435b1227
10 <requirement type="package" version="0.1.24">samblaster</requirement> 10 <requirement type="package" version="0.1.24">samblaster</requirement>
11 <requirement type="package" version="0.6.5">sambamba</requirement> 11 <requirement type="package" version="0.6.5">sambamba</requirement>
12 <requirement type="package" version="4.2.1">gawk</requirement> 12 <requirement type="package" version="4.2.1">gawk</requirement>
13 </requirements> 13 </requirements>
14 14
15 <version_command>lumpy 2>&1 >/dev/null | grep Program | cut -d ' ' -f 4 | cut -d ')' -f 1</version_command> 15 <version_command><![CDATA[
16 lumpy 2>&1 >/dev/null | grep Program | cut -d ' ' -f 4 | cut -d ')' -f 1
17 ]]></version_command>
16 18
17 <command detect_errors="aggressive"> 19 <command detect_errors="aggressive">
18 <![CDATA[ 20 <![CDATA[
19 $__tool_directory__/lumpy_wrapper.tcsh 21 $__tool_directory__/lumpy_wrapper.tcsh
20 '$paired' 22 '$paired'