Mercurial > repos > hepcat72 > lumpyexpress

diff lumpyexpress.xml @ 2:bfd745cf84c2 draft

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planemo upload for repository https://github.com/hepcat72/robs_galaxy_tools/tree/master/tools/lumpyexpress commit 3e9afda4e4ad444b21dc30b866074ed6fa527bfa
author hepcat72
date Thu, 25 Oct 2018 13:53:31 -0400
parents 107fa8e0b744
children d637435b1227
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--- a/lumpyexpress.xml	Tue Oct 16 17:34:40 2018 -0400
+++ b/lumpyexpress.xml	Thu Oct 25 13:53:31 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="lumpyexpress_0_1" name="lumpyexpress" version="0.1.1">
+<tool id="lumpyexpress_0_1" name="lumpyexpress" version="0.1.2">
     <description>Single or paired end SV detection</description>
 
     <requirements>
@@ -12,7 +12,7 @@
         <requirement type="package" version="4.2.1">gawk</requirement>
     </requirements>
 
-    <version_command>lumpy --version</version_command>
+    <version_command>lumpy 2>&1 >/dev/null | grep Program | cut -d ' ' -f 4 | cut -d ')' -f 1</version_command>
 
     <command detect_errors="aggressive">
         <![CDATA[