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212 </a> </li>
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372 </div>
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375 <span class='repo-root js-repo-root'><span itemscope="" itemtype="http://data-vocabulary.org/Breadcrumb"><a href="/DrHogart/galaxy-tools-unafold" class="" data-branch="master" data-direction="back" data-pjax="true" itemscope="url"><span itemprop="title">galaxy-tools-unafold</span></a></span></span><span class="separator">/</span><strong class="final-path">unafold.sh</strong>
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376 </div>
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377 </div>
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382 <img alt="" class="avatar" height="24" src="https://2.gravatar.com/avatar/55ca26a75b8058d263926c67401db626?d=https%3A%2F%2Fassets-cdn.github.com%2Fimages%2Fgravatars%2Fgravatar-user-420.png&r=x&s=140" width="24" />
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383 <span class="author"><span>Sergei Ryazansky</span></span>
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384 <time datetime="2015-03-09T14:55:04Z" is="relative-time">Mar 9, 2015</time>
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385 <div class="commit-title">
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386 <a href="/DrHogart/galaxy-tools-unafold/commit/f01c0b4c8c79177f45227ce2dbc6222b6a1a371b" class="message" data-pjax="true" title="initial commit">initial commit</a>
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387 </div>
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388 </div>
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389
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390 <div class="participation">
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391 <p class="quickstat">
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392 <a href="#blob_contributors_box" rel="facebox">
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393 <strong>0</strong>
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394 contributors
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395 </a>
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396 </p>
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397
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398 </div>
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399 <div id="blob_contributors_box" style="display:none">
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400 <h2 class="facebox-header">Users who have contributed to this file</h2>
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401 <ul class="facebox-user-list">
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402 </ul>
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403 </div>
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405
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406 <div class="file">
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408 <div class="file-actions">
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410 <a href="/DrHogart/galaxy-tools-unafold/raw/master/unafold.sh" class="minibutton " id="raw-url">Raw</a>
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411 <a href="/DrHogart/galaxy-tools-unafold/blame/master/unafold.sh" class="minibutton js-update-url-with-hash">Blame</a>
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412 <a href="/DrHogart/galaxy-tools-unafold/commits/master/unafold.sh" class="minibutton " rel="nofollow">History</a>
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413 </div><!-- /.button-group -->
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414
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417 aria-label="You must be signed in to make or propose changes"><span class="octicon octicon-pencil"></span></a>
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418
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419 <a class="octicon-button danger disabled tooltipped tooltipped-w" href="#"
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420 aria-label="You must be signed in to make or propose changes">
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421 </a>
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422 </div><!-- /.actions -->
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423 <div class="file-info">
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424 77 lines (66 sloc)
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425 <span class="file-info-divider"></span>
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426 1.912 kb
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427 </div>
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428 </div>
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429
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430 <div class="blob-wrapper data type-shell">
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431 <table class="highlight tab-size-8 js-file-line-container">
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432 <tr>
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433 <td id="L1" class="blob-num js-line-number" data-line-number="1"></td>
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434 <td id="LC1" class="blob-code js-file-line"><span class="pl-c">#!/bin/bash</span></td>
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435 </tr>
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436 <tr>
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437 <td id="L2" class="blob-num js-line-number" data-line-number="2"></td>
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438 <td id="LC2" class="blob-code js-file-line"><span class="pl-s3">set</span> -e</td>
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439 </tr>
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440 <tr>
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441 <td id="L3" class="blob-num js-line-number" data-line-number="3"></td>
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442 <td id="LC3" class="blob-code js-file-line">
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443 </td>
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444 </tr>
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445 <tr>
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446 <td id="L4" class="blob-num js-line-number" data-line-number="4"></td>
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447 <td id="LC4" class="blob-code js-file-line"><span class="pl-c">#arguments are -i input sequence file in fasta </span></td>
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448 </tr>
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449 <tr>
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450 <td id="L5" class="blob-num js-line-number" data-line-number="5"></td>
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451 <td id="LC5" class="blob-code js-file-line"><span class="pl-c"># -o output zip arhive </span></td>
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452 </tr>
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453 <tr>
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454 <td id="L6" class="blob-num js-line-number" data-line-number="6"></td>
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455 <td id="LC6" class="blob-code js-file-line"><span class="pl-c"># -t temp directory with results</span></td>
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456 </tr>
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457 <tr>
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458 <td id="L7" class="blob-num js-line-number" data-line-number="7"></td>
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459 <td id="LC7" class="blob-code js-file-line"><span class="pl-c"># -a DNA|RNA</span></td>
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460 </tr>
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461 <tr>
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462 <td id="L8" class="blob-num js-line-number" data-line-number="8"></td>
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463 <td id="LC8" class="blob-code js-file-line"><span class="pl-c"># -c tempreature (C)</span></td>
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464 </tr>
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465 <tr>
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466 <td id="L9" class="blob-num js-line-number" data-line-number="9"></td>
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467 <td id="LC9" class="blob-code js-file-line"><span class="pl-c"># -s [Na+] in M</span></td>
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468 </tr>
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469 <tr>
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470 <td id="L10" class="blob-num js-line-number" data-line-number="10"></td>
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471 <td id="LC10" class="blob-code js-file-line"><span class="pl-c"># -m [Mg++] in M</span></td>
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472 </tr>
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473 <tr>
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474 <td id="L11" class="blob-num js-line-number" data-line-number="11"></td>
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475 <td id="LC11" class="blob-code js-file-line"><span class="pl-c"># -b maxbp</span></td>
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476 </tr>
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477 <tr>
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478 <td id="L12" class="blob-num js-line-number" data-line-number="12"></td>
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479 <td id="LC12" class="blob-code js-file-line">
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480 </td>
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481 </tr>
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482 <tr>
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483 <td id="L13" class="blob-num js-line-number" data-line-number="13"></td>
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484 <td id="LC13" class="blob-code js-file-line"><span class="pl-c">#-n, --NA=(RNA | DNA) (defaults to RNA)</span></td>
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485 </tr>
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486 <tr>
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487 <td id="L14" class="blob-num js-line-number" data-line-number="14"></td>
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488 <td id="LC14" class="blob-code js-file-line"><span class="pl-c">#-t, --temp=<temperature> (defaults to 37)</span></td>
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489 </tr>
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490 <tr>
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491 <td id="L15" class="blob-num js-line-number" data-line-number="15"></td>
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492 <td id="LC15" class="blob-code js-file-line"><span class="pl-c">#-N, --sodium=<[Na+] in M> (defaults to 1)</span></td>
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493 </tr>
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494 <tr>
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495 <td id="L16" class="blob-num js-line-number" data-line-number="16"></td>
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496 <td id="LC16" class="blob-code js-file-line"><span class="pl-c">#-M, --magnesium=<[Mg++] in M> (defaults to 0)</span></td>
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497 </tr>
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498 <tr>
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499 <td id="L17" class="blob-num js-line-number" data-line-number="17"></td>
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500 <td id="LC17" class="blob-code js-file-line"><span class="pl-c">#-p, --polymer</span></td>
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501 </tr>
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502 <tr>
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503 <td id="L18" class="blob-num js-line-number" data-line-number="18"></td>
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504 <td id="LC18" class="blob-code js-file-line"><span class="pl-c">#-C, --Ct=<total strand concentration></span></td>
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505 </tr>
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506 <tr>
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507 <td id="L19" class="blob-num js-line-number" data-line-number="19"></td>
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508 <td id="LC19" class="blob-code js-file-line"><span class="pl-c">#-I, --noisolate</span></td>
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509 </tr>
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510 <tr>
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511 <td id="L20" class="blob-num js-line-number" data-line-number="20"></td>
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512 <td id="LC20" class="blob-code js-file-line"><span class="pl-c">#-m, --maxbp=<maximum basepair distance></span></td>
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513 </tr>
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514 <tr>
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515 <td id="L21" class="blob-num js-line-number" data-line-number="21"></td>
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516 <td id="LC21" class="blob-code js-file-line"><span class="pl-c">#-c, --constraints=<name of constraints file> (defaults to prefix.aux)</span></td>
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517 </tr>
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518 <tr>
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519 <td id="L22" class="blob-num js-line-number" data-line-number="22"></td>
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520 <td id="LC22" class="blob-code js-file-line"><span class="pl-c">#-P, --percent=<energy increment percent> (defaults to 5)</span></td>
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521 </tr>
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522 <tr>
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523 <td id="L23" class="blob-num js-line-number" data-line-number="23"></td>
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524 <td id="LC23" class="blob-code js-file-line"><span class="pl-c">#-W, --window=<window size> (default set by sequence length)</span></td>
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525 </tr>
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526 <tr>
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527 <td id="L24" class="blob-num js-line-number" data-line-number="24"></td>
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528 <td id="LC24" class="blob-code js-file-line"><span class="pl-c">#-X, --max=<maximum number of foldings> (defaults to 100)</span></td>
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529 </tr>
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530 <tr>
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531 <td id="L25" class="blob-num js-line-number" data-line-number="25"></td>
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532 <td id="LC25" class="blob-code js-file-line"><span class="pl-c"># --ann=(none | p-num | ss-count) (defaults to none)</span></td>
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533 </tr>
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534 <tr>
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535 <td id="L26" class="blob-num js-line-number" data-line-number="26"></td>
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536 <td id="LC26" class="blob-code js-file-line"><span class="pl-c"># --mode=(auto | bases | lines) (defaults to auto)</span></td>
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537 </tr>
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538 <tr>
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539 <td id="L27" class="blob-num js-line-number" data-line-number="27"></td>
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540 <td id="LC27" class="blob-code js-file-line"><span class="pl-c"># --label=<base numbering frequency></span></td>
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541 </tr>
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542 <tr>
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543 <td id="L28" class="blob-num js-line-number" data-line-number="28"></td>
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544 <td id="LC28" class="blob-code js-file-line"><span class="pl-c"># --rotate=<structure rotation angle></span></td>
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545 </tr>
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546 <tr>
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547 <td id="L29" class="blob-num js-line-number" data-line-number="29"></td>
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548 <td id="LC29" class="blob-code js-file-line"><span class="pl-c"># --run-type=(text | html) (defaults to text)</span></td>
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549 </tr>
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550 <tr>
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551 <td id="L30" class="blob-num js-line-number" data-line-number="30"></td>
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552 <td id="LC30" class="blob-code js-file-line"><span class="pl-c"># --model=(EM | PF) (defaults to EM)</span></td>
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553 </tr>
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554 <tr>
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555 <td id="L31" class="blob-num js-line-number" data-line-number="31"></td>
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556 <td id="LC31" class="blob-code js-file-line"><span class="pl-c"># --circular</span></td>
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557 </tr>
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558 <tr>
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559 <td id="L32" class="blob-num js-line-number" data-line-number="32"></td>
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560 <td id="LC32" class="blob-code js-file-line"><span class="pl-c">#Obscure options:</span></td>
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561 </tr>
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562 <tr>
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563 <td id="L33" class="blob-num js-line-number" data-line-number="33"></td>
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564 <td id="LC33" class="blob-code js-file-line"><span class="pl-c"># --allpairs</span></td>
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565 </tr>
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566 <tr>
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567 <td id="L34" class="blob-num js-line-number" data-line-number="34"></td>
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568 <td id="LC34" class="blob-code js-file-line"><span class="pl-c"># --maxloop=<maximum bulge/interior loop size> (defaults to 30)</span></td>
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569 </tr>
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570 <tr>
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571 <td id="L35" class="blob-num js-line-number" data-line-number="35"></td>
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572 <td id="LC35" class="blob-code js-file-line"><span class="pl-c"># --nodangle</span></td>
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573 </tr>
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574 <tr>
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575 <td id="L36" class="blob-num js-line-number" data-line-number="36"></td>
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576 <td id="LC36" class="blob-code js-file-line"><span class="pl-c"># --simple</span></td>
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577 </tr>
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578 <tr>
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579 <td id="L37" class="blob-num js-line-number" data-line-number="37"></td>
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|
580 <td id="LC37" class="blob-code js-file-line"><span class="pl-c"># --prefilter=<filter value></span></td>
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|
581 </tr>
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582 <tr>
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|
583 <td id="L38" class="blob-num js-line-number" data-line-number="38"></td>
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584 <td id="LC38" class="blob-code js-file-line">
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585 </td>
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586 </tr>
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587 <tr>
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588 <td id="L39" class="blob-num js-line-number" data-line-number="39"></td>
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589 <td id="LC39" class="blob-code js-file-line">NA=RNA</td>
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590 </tr>
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591 <tr>
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|
592 <td id="L40" class="blob-num js-line-number" data-line-number="40"></td>
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593 <td id="LC40" class="blob-code js-file-line">TM=37</td>
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594 </tr>
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595 <tr>
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|
|
596 <td id="L41" class="blob-num js-line-number" data-line-number="41"></td>
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597 <td id="LC41" class="blob-code js-file-line">NAT=1</td>
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598 </tr>
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599 <tr>
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|
600 <td id="L42" class="blob-num js-line-number" data-line-number="42"></td>
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601 <td id="LC42" class="blob-code js-file-line">MG=0</td>
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602 </tr>
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603 <tr>
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|
604 <td id="L43" class="blob-num js-line-number" data-line-number="43"></td>
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605 <td id="LC43" class="blob-code js-file-line">
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606 </td>
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|
607 </tr>
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608 <tr>
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609 <td id="L44" class="blob-num js-line-number" data-line-number="44"></td>
|
|
|
610 <td id="LC44" class="blob-code js-file-line"><span class="pl-k">while</span> <span class="pl-s3">getopts</span> <span class="pl-s1"><span class="pl-pds">"</span>:i:o:t:a:c:s:m:<span class="pl-pds">"</span></span> OPTION<span class="pl-k">;</span></td>
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611 </tr>
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612 <tr>
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|
613 <td id="L45" class="blob-num js-line-number" data-line-number="45"></td>
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614 <td id="LC45" class="blob-code js-file-line"><span class="pl-k">do</span></td>
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615 </tr>
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616 <tr>
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|
617 <td id="L46" class="blob-num js-line-number" data-line-number="46"></td>
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|
618 <td id="LC46" class="blob-code js-file-line"> <span class="pl-k">case</span> <span class="pl-vo">$OPTION</span> in</td>
|
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|
619 </tr>
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|
620 <tr>
|
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|
621 <td id="L47" class="blob-num js-line-number" data-line-number="47"></td>
|
|
|
622 <td id="LC47" class="blob-code js-file-line"> i) INPUT=<span class="pl-s1"><span class="pl-pds">"</span><span class="pl-vo">$OPTARG</span><span class="pl-pds">"</span></span>;;</td>
|
|
|
623 </tr>
|
|
|
624 <tr>
|
|
|
625 <td id="L48" class="blob-num js-line-number" data-line-number="48"></td>
|
|
|
626 <td id="LC48" class="blob-code js-file-line"> o) ZIP_ARHIVE=<span class="pl-s1"><span class="pl-pds">"</span><span class="pl-vo">$OPTARG</span><span class="pl-pds">"</span></span>;;</td>
|
|
|
627 </tr>
|
|
|
628 <tr>
|
|
|
629 <td id="L49" class="blob-num js-line-number" data-line-number="49"></td>
|
|
|
630 <td id="LC49" class="blob-code js-file-line"> t) TEMP_DIR=<span class="pl-s1"><span class="pl-pds">"</span><span class="pl-vo">$OPTARG</span><span class="pl-pds">"</span></span>;;</td>
|
|
|
631 </tr>
|
|
|
632 <tr>
|
|
|
633 <td id="L50" class="blob-num js-line-number" data-line-number="50"></td>
|
|
|
634 <td id="LC50" class="blob-code js-file-line"> a) NA=<span class="pl-s1"><span class="pl-pds">"</span><span class="pl-vo">$OPTARG</span><span class="pl-pds">"</span></span>;;</td>
|
|
|
635 </tr>
|
|
|
636 <tr>
|
|
|
637 <td id="L51" class="blob-num js-line-number" data-line-number="51"></td>
|
|
|
638 <td id="LC51" class="blob-code js-file-line"> c) TM=<span class="pl-s1"><span class="pl-pds">"</span><span class="pl-vo">$OPTARG</span><span class="pl-pds">"</span></span>;;</td>
|
|
|
639 </tr>
|
|
|
640 <tr>
|
|
|
641 <td id="L52" class="blob-num js-line-number" data-line-number="52"></td>
|
|
|
642 <td id="LC52" class="blob-code js-file-line"> s) NAT=<span class="pl-s1"><span class="pl-pds">"</span><span class="pl-vo">$OPTARG</span><span class="pl-pds">"</span></span>;;</td>
|
|
|
643 </tr>
|
|
|
644 <tr>
|
|
|
645 <td id="L53" class="blob-num js-line-number" data-line-number="53"></td>
|
|
|
646 <td id="LC53" class="blob-code js-file-line"> m) MG=<span class="pl-s1"><span class="pl-pds">"</span><span class="pl-vo">$OPTARG</span><span class="pl-pds">"</span></span>;;</td>
|
|
|
647 </tr>
|
|
|
648 <tr>
|
|
|
649 <td id="L54" class="blob-num js-line-number" data-line-number="54"></td>
|
|
|
650 <td id="LC54" class="blob-code js-file-line"> <span class="pl-k">esac</span></td>
|
|
|
651 </tr>
|
|
|
652 <tr>
|
|
|
653 <td id="L55" class="blob-num js-line-number" data-line-number="55"></td>
|
|
|
654 <td id="LC55" class="blob-code js-file-line"><span class="pl-k">done</span></td>
|
|
|
655 </tr>
|
|
|
656 <tr>
|
|
|
657 <td id="L56" class="blob-num js-line-number" data-line-number="56"></td>
|
|
|
658 <td id="LC56" class="blob-code js-file-line"> </td>
|
|
|
659 </tr>
|
|
|
660 <tr>
|
|
|
661 <td id="L57" class="blob-num js-line-number" data-line-number="57"></td>
|
|
|
662 <td id="LC57" class="blob-code js-file-line">mkdir -p <span class="pl-vo">${TEMP_DIR}</span>/unafold</td>
|
|
|
663 </tr>
|
|
|
664 <tr>
|
|
|
665 <td id="L58" class="blob-num js-line-number" data-line-number="58"></td>
|
|
|
666 <td id="LC58" class="blob-code js-file-line"><span class="pl-s3">cd</span> <span class="pl-vo">${TEMP_DIR}</span>/unafold</td>
|
|
|
667 </tr>
|
|
|
668 <tr>
|
|
|
669 <td id="L59" class="blob-num js-line-number" data-line-number="59"></td>
|
|
|
670 <td id="LC59" class="blob-code js-file-line">
|
|
|
671 </td>
|
|
|
672 </tr>
|
|
|
673 <tr>
|
|
|
674 <td id="L60" class="blob-num js-line-number" data-line-number="60"></td>
|
|
|
675 <td id="LC60" class="blob-code js-file-line">NA=<span class="pl-s1"><span class="pl-pds">$(</span><span class="pl-s3">echo</span> <span class="pl-vo">$NA</span> <span class="pl-k">|</span> tr <span class="pl-s1"><span class="pl-pds">'</span>[:lower:]<span class="pl-pds">'</span></span> <span class="pl-s1"><span class="pl-pds">'</span>[:upper:]<span class="pl-pds">'</span></span><span class="pl-pds">)</span></span></td>
|
|
|
676 </tr>
|
|
|
677 <tr>
|
|
|
678 <td id="L61" class="blob-num js-line-number" data-line-number="61"></td>
|
|
|
679 <td id="LC61" class="blob-code js-file-line">
|
|
|
680 </td>
|
|
|
681 </tr>
|
|
|
682 <tr>
|
|
|
683 <td id="L62" class="blob-num js-line-number" data-line-number="62"></td>
|
|
|
684 <td id="LC62" class="blob-code js-file-line"><span class="pl-c"># calucalation of RNA don't need the concentraion of salts</span></td>
|
|
|
685 </tr>
|
|
|
686 <tr>
|
|
|
687 <td id="L63" class="blob-num js-line-number" data-line-number="63"></td>
|
|
|
688 <td id="LC63" class="blob-code js-file-line"><span class="pl-k">if</span> [[ <span class="pl-vo">${NA}</span> <span class="pl-k">==</span> <span class="pl-s1"><span class="pl-pds">'</span>DNA<span class="pl-pds">'</span></span> ]]<span class="pl-k">;</span> <span class="pl-k">then</span></td>
|
|
|
689 </tr>
|
|
|
690 <tr>
|
|
|
691 <td id="L64" class="blob-num js-line-number" data-line-number="64"></td>
|
|
|
692 <td id="LC64" class="blob-code js-file-line"> UNAFold.pl -n <span class="pl-vo">${NA}</span> -t <span class="pl-vo">${TM}</span> -N <span class="pl-vo">${NAT}</span> -M <span class="pl-vo">${MG}</span> <span class="pl-vo">${INPUT}</span></td>
|
|
|
693 </tr>
|
|
|
694 <tr>
|
|
|
695 <td id="L65" class="blob-num js-line-number" data-line-number="65"></td>
|
|
|
696 <td id="LC65" class="blob-code js-file-line"><span class="pl-k">else</span></td>
|
|
|
697 </tr>
|
|
|
698 <tr>
|
|
|
699 <td id="L66" class="blob-num js-line-number" data-line-number="66"></td>
|
|
|
700 <td id="LC66" class="blob-code js-file-line"> UNAFold.pl -n <span class="pl-vo">${NA}</span> -t <span class="pl-vo">${TM}</span> <span class="pl-vo">${INPUT}</span></td>
|
|
|
701 </tr>
|
|
|
702 <tr>
|
|
|
703 <td id="L67" class="blob-num js-line-number" data-line-number="67"></td>
|
|
|
704 <td id="LC67" class="blob-code js-file-line"><span class="pl-k">fi</span></td>
|
|
|
705 </tr>
|
|
|
706 <tr>
|
|
|
707 <td id="L68" class="blob-num js-line-number" data-line-number="68"></td>
|
|
|
708 <td id="LC68" class="blob-code js-file-line">
|
|
|
709 </td>
|
|
|
710 </tr>
|
|
|
711 <tr>
|
|
|
712 <td id="L69" class="blob-num js-line-number" data-line-number="69"></td>
|
|
|
713 <td id="LC69" class="blob-code js-file-line"><span class="pl-s3">echo</span> <span class="pl-s1"><span class="pl-pds">"</span><span class="pl-pds">"</span></span></td>
|
|
|
714 </tr>
|
|
|
715 <tr>
|
|
|
716 <td id="L70" class="blob-num js-line-number" data-line-number="70"></td>
|
|
|
717 <td id="LC70" class="blob-code js-file-line"><span class="pl-s3">echo</span> <span class="pl-s1"><span class="pl-pds">"</span>Parametres of UNAFold run:<span class="pl-pds">"</span></span></td>
|
|
|
718 </tr>
|
|
|
719 <tr>
|
|
|
720 <td id="L71" class="blob-num js-line-number" data-line-number="71"></td>
|
|
|
721 <td id="LC71" class="blob-code js-file-line">cat <span class="pl-k">*</span>run</td>
|
|
|
722 </tr>
|
|
|
723 <tr>
|
|
|
724 <td id="L72" class="blob-num js-line-number" data-line-number="72"></td>
|
|
|
725 <td id="LC72" class="blob-code js-file-line">
|
|
|
726 </td>
|
|
|
727 </tr>
|
|
|
728 <tr>
|
|
|
729 <td id="L73" class="blob-num js-line-number" data-line-number="73"></td>
|
|
|
730 <td id="LC73" class="blob-code js-file-line"><span class="pl-s3">cd</span> ../</td>
|
|
|
731 </tr>
|
|
|
732 <tr>
|
|
|
733 <td id="L74" class="blob-num js-line-number" data-line-number="74"></td>
|
|
|
734 <td id="LC74" class="blob-code js-file-line">zip -r -q unafold.zip unafold</td>
|
|
|
735 </tr>
|
|
|
736 <tr>
|
|
|
737 <td id="L75" class="blob-num js-line-number" data-line-number="75"></td>
|
|
|
738 <td id="LC75" class="blob-code js-file-line">mv unafold.zip <span class="pl-vo">${ZIP_ARHIVE}</span></td>
|
|
|
739 </tr>
|
|
|
740 <tr>
|
|
|
741 <td id="L76" class="blob-num js-line-number" data-line-number="76"></td>
|
|
|
742 <td id="LC76" class="blob-code js-file-line">
|
|
|
743 </td>
|
|
|
744 </tr>
|
|
|
745 </table>
|
|
|
746
|
|
|
747 </div>
|
|
|
748
|
|
|
749 </div>
|
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750
|
|
|
751 <a href="#jump-to-line" rel="facebox[.linejump]" data-hotkey="l" style="display:none">Jump to Line</a>
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752 <div id="jump-to-line" style="display:none">
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753 <form accept-charset="UTF-8" class="js-jump-to-line-form">
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754 <input class="linejump-input js-jump-to-line-field" type="text" placeholder="Jump to line…" autofocus>
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755 <button type="submit" class="button">Go</button>
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756 </form>
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757 </div>
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758
|
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759 </div>
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|
|
760
|
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761 </div><!-- /.repo-container -->
|
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762 <div class="modal-backdrop"></div>
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763 </div><!-- /.container -->
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764 </div><!-- /.site -->
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765
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766
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767 </div><!-- /.wrapper -->
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768
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769 <div class="container">
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770 <div class="site-footer" role="contentinfo">
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771 <ul class="site-footer-links right">
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772 <li><a href="https://status.github.com/" data-ga-click="Footer, go to status, text:status">Status</a></li>
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773 <li><a href="https://developer.github.com" data-ga-click="Footer, go to api, text:api">API</a></li>
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774 <li><a href="http://training.github.com" data-ga-click="Footer, go to training, text:training">Training</a></li>
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775 <li><a href="http://shop.github.com" data-ga-click="Footer, go to shop, text:shop">Shop</a></li>
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776 <li><a href="https://github.com/blog" data-ga-click="Footer, go to blog, text:blog">Blog</a></li>
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777 <li><a href="https://github.com/about" data-ga-click="Footer, go to about, text:about">About</a></li>
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778
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779 </ul>
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780
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781 <a href="https://github.com" aria-label="Homepage">
|
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782 <span class="mega-octicon octicon-mark-github" title="GitHub"></span>
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783 </a>
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784 <ul class="site-footer-links">
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785 <li>© 2015 <span title="0.03449s from github-fe124-cp1-prd.iad.github.net">GitHub</span>, Inc.</li>
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786 <li><a href="https://github.com/site/terms" data-ga-click="Footer, go to terms, text:terms">Terms</a></li>
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787 <li><a href="https://github.com/site/privacy" data-ga-click="Footer, go to privacy, text:privacy">Privacy</a></li>
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788 <li><a href="https://github.com/security" data-ga-click="Footer, go to security, text:security">Security</a></li>
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789 <li><a href="https://github.com/contact" data-ga-click="Footer, go to contact, text:contact">Contact</a></li>
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790 </ul>
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791 </div>
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792 </div>
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793
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794
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795 <div class="fullscreen-overlay js-fullscreen-overlay" id="fullscreen_overlay">
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796 <div class="fullscreen-container js-suggester-container">
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797 <div class="textarea-wrap">
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798 <textarea name="fullscreen-contents" id="fullscreen-contents" class="fullscreen-contents js-fullscreen-contents" placeholder=""></textarea>
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799 <div class="suggester-container">
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800 <div class="suggester fullscreen-suggester js-suggester js-navigation-container"></div>
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801 </div>
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802 </div>
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803 </div>
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804 <div class="fullscreen-sidebar">
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805 <a href="#" class="exit-fullscreen js-exit-fullscreen tooltipped tooltipped-w" aria-label="Exit Zen Mode">
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806 <span class="mega-octicon octicon-screen-normal"></span>
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807 </a>
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808 <a href="#" class="theme-switcher js-theme-switcher tooltipped tooltipped-w"
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809 aria-label="Switch themes">
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810 <span class="octicon octicon-color-mode"></span>
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811 </a>
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812 </div>
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813 </div>
|
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814
|
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815
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816
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817
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818
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819 <div id="ajax-error-message" class="flash flash-error">
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820 <span class="octicon octicon-alert"></span>
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821 <a href="#" class="octicon octicon-x flash-close js-ajax-error-dismiss" aria-label="Dismiss error"></a>
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822 Something went wrong with that request. Please try again.
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823 </div>
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824
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825
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826 <script crossorigin="anonymous" src="https://assets-cdn.github.com/assets/frameworks-4bf9533935259bb898a8d60e1958f4d047968c430eae889800a187e279faf38f.js"></script>
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827 <script async="async" crossorigin="anonymous" src="https://assets-cdn.github.com/assets/github-9d83860b0798bdd794d00b491fc7cb4ab9ea416cc8c511f719e253faa86e635b.js"></script>
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828
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829
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830
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831 </body>
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832 </html>
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833
|
