Mercurial > repos > hyungrolee > package_mgescan_3_0_0
view tool_dependencies.xml @ 0:39f88d354d7d draft
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author | hyungrolee |
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date | Mon, 15 Feb 2016 03:30:11 -0500 |
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children | 51414871fd5b |
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<?xml version="1.0"?> <tool_dependency> <package name="mgescan" version="3.0.0"> <install version="1.0"> <actions_group> <!-- <actions architecture="x86_64" os="linux"> <action type="download_by_url"> https://github.com/MGEScan/mgescan/archive/1.0.tar.gz </action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> </actions> --> <actions> <action type="download_by_url"> https://github.com/MGEScan/mgescan/archive/1.0.tar.gz </action> <action type="set_environment_for_install"> <repository changeset_revision="a2e1d1f25e35" name="tandem_repeats_finder" owner="urgi-team" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="trf" version="4.0" /> </repository> </action> <action type="shell_command">python setup.py install</action> <action type="move_file"> <source>mgescan</source> <destination>$INSTALL_DIR/mgescan</destination> </action> </actions> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/mgescan</environment_variable> <environment_variable action="set_to" name="MGESCAN_SRC">$INSTALL_DIR</environment_variable> </action> </actions_group> </install> <readme> Program: mgescan (Tools for identifying LTR & nonLTR) Version: 3.0 Usage: mgescan both <genome_dir> [--output=<data_dir>] [--mpi=<num>] mgescan ltr <genome_dir> [--output=<data_dir>] [--mpi=<num>] mgescan nonltr <genome_dir> [--output=<data_dir>] [--mpi=<num>] mgescan (-h | --help) mgescan --version </readme> </package> </tool_dependency>