Mercurial > repos > iarc > mutspec
comparison mutspecFilter.pl @ 4:916846f73e25 draft
Uploaded
| author | iarc | 
|---|---|
| date | Fri, 29 Apr 2016 05:11:28 -0400 | 
| parents | 8c682b3a7c5b | 
| children | 097ae310ced0 | 
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| 3:14fe7238c6d7 | 4:916846f73e25 | 
|---|---|
| 43 if($listAVDB eq "empty") { $listAVDB = "$dir/${refGenome}_listAVDB.txt" } | 43 if($listAVDB eq "empty") { $listAVDB = "$dir/${refGenome}_listAVDB.txt" } | 
| 44 | 44 | 
| 45 # Zero databases is specified | 45 # Zero databases is specified | 
| 46 if( ($dbSNP == 0) && ($segDup == 0) && ($esp == 0) && ($thG == 0) ) | 46 if( ($dbSNP == 0) && ($segDup == 0) && ($esp == 0) && ($thG == 0) ) | 
| 47 { | 47 { | 
| 48 print STDERR "There is no databases selected for filtering against!!!\nPlease choose at least one between dbSNP, SegDup, ESP (only for human genome) or 1000 genome (only for human genome)\n"; | 48 print STDERR "There is no databases selected for filtering against!!!\nPlease chose at least one between dbSNP, SegDup, ESP (only for human genome) or 1000 genome (only for human genome)\n"; | 
| 49 exit; | 49 exit; | 
| 50 } | 50 } | 
| 51 | 51 | 
| 52 | 52 | 
| 53 | 53 | 
