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comparison mutspecCompare.xml @ 7:eda59b985b1c draft default tip

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author iarc
date Mon, 13 Mar 2017 08:21:19 -0400
parents 46a10309dfe2
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6:46a10309dfe2 7:eda59b985b1c
2 <tool id="mutSpeccompare" name="MutSpec Compare" version="0.0.1"> 2 <tool id="mutSpeccompare" name="MutSpec Compare" version="0.0.1">
3 <description>Compare signatures with the cosine similarity method</description> 3 <description>Compare signatures with the cosine similarity method</description>
4 4
5 <requirements> 5 <requirements>
6 <requirement type="set_environment">SCRIPT_PATH</requirement> 6 <requirement type="set_environment">SCRIPT_PATH</requirement>
7 <requirement type="package" version="3.1.2">R</requirement> 7 <requirement type="package" version="3.2.1">R</requirement>
8 <requirement type="package" version="2.11.1">fontconfig</requirement>
8 <requirement type="package" version="0.1">mutspec</requirement> 9 <requirement type="package" version="0.1">mutspec</requirement>
9 </requirements> 10 </requirements>
10 11
11 <command interpreter="bash"> 12 <command interpreter="bash">
12 mutspecCompare_wrapper.sh 13 mutspecCompare_wrapper.sh
38 </inputs> 39 </inputs>
39 40
40 <outputs> 41 <outputs>
41 <data name="output" format="html" label="Similarity_Matrix on dataset ${newsign.name}" /> 42 <data name="output" format="html" label="Similarity_Matrix on dataset ${newsign.name}" />
42 </outputs> 43 </outputs>
44
45 <stdio>
46 <regex match="Error" source="stderr" level="fatal" description="Read error message for more details" />
47 </stdio>
43 48
44 49
45 <help> 50 <help>
46 51
47 **What it does** 52 **What it does**
102 +-------------------+---------------+-----------------------+--------------+--------------+ 107 +-------------------+---------------+-----------------------+--------------+--------------+
103 | C>A | CCC | C[C>A]C | 0.0073423678 | 0.000213681 + 108 | C>A | CCC | C[C>A]C | 0.0073423678 | 0.000213681 +
104 +-------------------+---------------+-----------------------+--------------+--------------+ 109 +-------------------+---------------+-----------------------+--------------+--------------+
105 110
106 111
112 --------------------------------------------------------------------------------------------------------------------------------------------------
113
114 **Contact**
115
116 ardinm@fellows.iarc.fr; cahaisv@iarc.fr
117
118 --------------------------------------------------------------------------------------------------------------------------------------------------
119
120 **Code**
121
122 The source code is available on `GitHub`__
123
124 .. __: https://github.com/IARCbioinfo/mutspec.git
125
107 </help> 126 </help>
108 127
109 128
110 <citations> 129 <citations>
111 <citation type="bibtex"> 130 <citation type="bibtex">