Mercurial > repos > iarc > mutspec
diff mutspecCompare_wrapper.sh @ 0:8c682b3a7c5b draft
Uploaded
| author | iarc |
|---|---|
| date | Tue, 19 Apr 2016 03:07:11 -0400 |
| parents | |
| children | 46a10309dfe2 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mutspecCompare_wrapper.sh Tue Apr 19 03:07:11 2016 -0400 @@ -0,0 +1,29 @@ +#!/bin/bash + +newsign=$1 +html=$2 +ref=$3 + +output_dir=${html%%.*}_files + +matrix=${newsign%.*}_files/NMF/Files/MatrixW-Normto100.txt + +mkdir $output_dir + +Rscript --no-save $SCRIPT_PATH/R/compareSignature_Galaxy.r $ref $matrix $output_dir 2>&1 + +# Convert the image into png format +cd $output_dir + +echo "<html><body>" >> $html +echo "<center> <h2> Cosine similarity comparison </h2> </center>" >> $html + +echo "<table>" >> $html +echo "<tr> <td> <center> <br/> <a href="Similarity_Matrix.txt">Similarity_Matrix.txt</a> </center> </td> </tr>" >> $html +echo "<tr>" >> $html +echo "<td><a href="Similarity_Matrix.png">" >> $html +echo "<img width="1000" src="Similarity_Matrix.png" /></a></td>" >> $html +echo "</tr>" >> $html +echo "</table>" >> $html + +exit 0