Mercurial > repos > iarc > mutspec
diff mutspecCompare_wrapper.sh @ 7:eda59b985b1c draft default tip
Uploaded
| author | iarc |
|---|---|
| date | Mon, 13 Mar 2017 08:21:19 -0400 |
| parents | 46a10309dfe2 |
| children |
line wrap: on
line diff
--- a/mutspecCompare_wrapper.sh Tue Jun 28 02:59:32 2016 -0400 +++ b/mutspecCompare_wrapper.sh Mon Mar 13 08:21:19 2017 -0400 @@ -1,29 +1,29 @@ -#!/bin/bash - -newsign=$1 -html=$2 -ref=$3 - -output_dir=${html%%.*}_files - -matrix=${newsign%.*}_files/NMF/Files/MatrixW-Normto100.txt - -mkdir $output_dir - -Rscript --no-save $SCRIPT_PATH/R/compareSignature_Galaxy.r $ref $matrix $output_dir 2>&1 - -# Convert the image into png format -cd $output_dir - -echo "<html><body>" >> $html -echo "<center> <h2> Cosine similarity comparison </h2> </center>" >> $html - -echo "<table>" >> $html -echo "<tr> <td> <center> <br/> <a href="Similarity_Matrix.txt">Similarity_Matrix.txt</a> </center> </td> </tr>" >> $html -echo "<tr>" >> $html -echo "<td><a href="Similarity_Matrix.png">" >> $html -echo "<img width="1000" src="Similarity_Matrix.png" /></a></td>" >> $html -echo "</tr>" >> $html -echo "</table>" >> $html - -exit 0 +#!/bin/bash + +newsign=$1 +html=$2 +ref=$3 + +output_dir=${html%%.*}_files + +matrix=${newsign%.*}_files/NMF/Files/MatrixW-Normto100.txt + +mkdir $output_dir + +Rscript --no-save $SCRIPT_PATH/R/compareSignature_Galaxy.r $ref $matrix $output_dir 2>&1 + +# Convert the image into png format +cd $output_dir + +echo "<html><body>" >> $html +echo "<center> <h2> Cosine similarity comparison </h2> </center>" >> $html + +echo "<table>" >> $html +echo "<tr> <td> <center> <br/> <a href="Similarity_Matrix.txt">Similarity_Matrix.txt</a> </center> </td> </tr>" >> $html +echo "<tr>" >> $html +echo "<td><a href="Similarity_Matrix.png">" >> $html +echo "<img width="1000" src="Similarity_Matrix.png" /></a></td>" >> $html +echo "</tr>" >> $html +echo "</table>" >> $html + +exit 0