view tool_dependencies.xml @ 2:9d363eb081b5 draft

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<?xml version="1.0"?>
<tool_dependency>
  <set_environment version="1.0">
    <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
  </set_environment>
	
	<package name="perl" version="5.18.1">
    <install version="1.0">
      <actions>
        <action type="setup_perl_environment">
          <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
            <package name="perl" prior_installation_required="True" version="5.18.1" />
          </repository> 

          <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
            <package name="R" version="3.0.1" />
          </repository>

          <!-- allow downloading and installing an Perl package from cpan.org-->
          <package>http://search.cpan.org/CPAN/authors/id/T/TO/TODDR/IPC-Run-0.94.tar.gz</package>
          <package>http://search.cpan.org/CPAN/authors/id/A/AB/ABIGAIL/Regexp-Common-2013031301.tar.gz</package>
          <package>http://search.cpan.org/CPAN/authors/id/F/FA/FANGLY/Statistics-R-0.33.tar.gz</package>
          <package>http://search.cpan.org/CPAN/authors/id/J/JM/JMCNAMARA/OLE-Storage_Lite-0.19.tar.gz</package>
          <package>http://search.cpan.org/CPAN/authors/id/J/JM/JMCNAMARA/Spreadsheet-WriteExcel-2.40.tar.gz</package>
          <package>http://search.cpan.org/CPAN/authors/id/D/DL/DLUX/Parallel-ForkManager-0.7.5.tar.gz</package>
        </action>
      <action type="set_environment">
        <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5</environment_variable>
      </action>
      </actions>
    </install>
  </package>

  <package name="perl" version="5.18.1">
    <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
  </package>
    
  <package name="weblogo" version="3.3">
    <repository changeset_revision="648e4b32f15c" name="package_weblogo_3_3" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
  </package>
    
  <package name="numpy" version="1.9">
    <repository changeset_revision="57b37f63cb84" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
  </package>

	<package name="R" version="3.1.2">
    <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
  </package>
    
  <package name="mutspec" version="0.1">
    <repository changeset_revision="63cc1719e1aa" name="package_r_mutspec_0_1" owner="iarc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
  </package>
    
</tool_dependency>