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<?xml version="1.0"?>
<tool_dependency>
  <package name="R" version="3.1.2">
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    </package>
    <package name="mutspec" version="0.1">
      <install version="1.0">
          <actions>
              <action type="setup_r_environment">
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                      <package name="R" version="3.1.2" />
                    </repository>
                    <package>http://cran.univ-lyon1.fr/src/contrib/colorspace_1.2-6.tar.gz?raw=true</package>
                    <package>http://cran.r-project.org/src/contrib/Archive/stringi/stringi_0.4-1.tar.gz?raw=true</package>
                    <package>http://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz?raw=true</package>
                    <package>http://cran.r-project.org/src/contrib/stringr_1.0.0.tar.gz?raw=true</package>
                    <package>http://cran.univ-lyon1.fr/src/contrib/RColorBrewer_1.1-2.tar.gz?raw=true</package>
                    <package>http://cran.univ-lyon1.fr/src/contrib/dichromat_2.0-0.tar.gz?raw=true</package>
                    <package>https://cran.r-project.org/src/contrib/Archive/munsell/munsell_0.4.2.tar.gz?raw=true</package>
                    <package>http://cran.univ-lyon1.fr/src/contrib/labeling_0.3.tar.gz?raw=true</package>
                    <package>https://cran.r-project.org/src/contrib/Archive/Rcpp/Rcpp_0.11.6.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/Archive/plyr/plyr_1.8.3.tar.gz</package>
                    <package>https://cran.rstudio.com/src/contrib/Archive/digest/digest_0.6.8.tar.gz?raw=true</package>
                    <package>https://cran.r-project.org/src/contrib/Archive/gtable/gtable_0.1.2.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/reshape2_1.4.1.tar.gz</package>
                    <package>https://cran.r-project.org/src/contrib/Archive/scales/scales_0.2.5.tar.gz</package>
                    <package>http://cran.univ-lyon1.fr/src/contrib/proto_0.3-10.tar.gz?raw=true</package>
                    <package>https://cran.r-project.org/src/contrib/Archive/ggplot2/ggplot2_1.0.1.tar.gz?raw=true</package>
                    <package>https://cran.r-project.org/src/contrib/Archive/registry/registry_0.2.tar.gz</package>
           <package>https://cran.r-project.org/src/contrib/Archive/xtable/xtable_1.7-4.tar.gz</package>
           <package>http://cran.univ-lyon1.fr/src/contrib/pkgmaker_0.22.tar.gz?raw=true</package>
           <package>http://cran.univ-lyon1.fr/src/contrib/rngtools_1.2.4.tar.gz?raw=true</package>
           <package>http://cran.univ-lyon1.fr/src/contrib/gridBase_0.4-7.tar.gz?raw=true</package>
           <package>https://cran.r-project.org/src/contrib/Archive/iterators/iterators_1.0.7.tar.gz</package>
           <package>https://cran.r-project.org/src/contrib/Archive/foreach/foreach_1.4.2.tar.gz</package>
           <package>https://cran.r-project.org/src/contrib/Archive/doParallel/doParallel_1.0.8.tar.gz</package>
           <package>http://cran.univ-lyon1.fr/src/contrib/NMF_0.20.6.tar.gz?raw=true</package>
           <package>http://cran.univ-lyon1.fr/src/contrib/gtools_3.5.0.tar.gz?raw=true</package>
           <package>https://cran.r-project.org/src/contrib/Archive/gdata/gdata_2.16.1.tar.gz</package>
           <package>http://cran.univ-lyon1.fr/src/contrib/bitops_1.0-6.tar.gz?raw=true</package>
           <package>http://cran.univ-lyon1.fr/src/contrib/caTools_1.17.1.tar.gz?raw=true</package>
           <package>http://cran.univ-lyon1.fr/src/contrib/png_0.1-7.tar.gz?raw=true</package>
           <package>https://cran.r-project.org/src/contrib/Archive/gplots/gplots_2.17.0.tar.gz</package>
           <package>https://cran.r-project.org/src/contrib/Archive/gridExtra/gridExtra_0.9.1.tar.gz</package>
           <package>http://cran.univ-lyon1.fr/src/contrib/reshape_0.8.5.tar.gz?raw=true</package>
           <package>http://cran.univ-lyon1.fr/src/contrib/getopt_1.20.0.tar.gz?raw=true</package>
           <package>http://cran.univ-lyon1.fr/src/contrib/SnowballC_0.5.1.tar.gz?raw=true</package>
           <package>http://cran.univ-lyon1.fr/src/contrib/lsa_0.73.1.tar.gz?raw=true</package>
                </action>
            </actions>
        </install>
    </package>
</tool_dependency>