# HG changeset patch
# User iarc
# Date 1461049544 14400
# Node ID 63cc1719e1aa2f0c1e59281338862a3f2152b83f

Uploaded

diff -r 000000000000 -r 63cc1719e1aa tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Apr 19 03:05:44 2016 -0400
@@ -0,0 +1,53 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="R" version="3.1.2">
+      <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="mutspec" version="0.1">
+      <install version="1.0">
+          <actions>
+              <action type="setup_r_environment">
+                  <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                      <package name="R" version="3.1.2" />
+                    </repository>
+                    <package>http://cran.univ-lyon1.fr/src/contrib/colorspace_1.2-6.tar.gz?raw=true</package>
+                    <package>http://cran.r-project.org/src/contrib/Archive/stringi/stringi_0.4-1.tar.gz?raw=true</package>
+                    <package>http://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz?raw=true</package>
+                    <package>http://cran.r-project.org/src/contrib/stringr_1.0.0.tar.gz?raw=true</package>
+                    <package>http://cran.univ-lyon1.fr/src/contrib/RColorBrewer_1.1-2.tar.gz?raw=true</package>
+                    <package>http://cran.univ-lyon1.fr/src/contrib/dichromat_2.0-0.tar.gz?raw=true</package>
+                    <package>https://cran.r-project.org/src/contrib/Archive/munsell/munsell_0.4.2.tar.gz?raw=true</package>
+                    <package>http://cran.univ-lyon1.fr/src/contrib/labeling_0.3.tar.gz?raw=true</package>
+                    <package>https://cran.r-project.org/src/contrib/Archive/Rcpp/Rcpp_0.11.6.tar.gz</package>
+                    <package>http://cran.univ-lyon1.fr/src/contrib/plyr_1.8.3.tar.gz?raw=true</package>
+                    <package>https://cran.rstudio.com/src/contrib/Archive/digest/digest_0.6.8.tar.gz?raw=true</package>
+                    <package>https://cran.r-project.org/src/contrib/Archive/gtable/gtable_0.1.2.tar.gz</package>
+                    <package>http://cran.univ-lyon1.fr/src/contrib/reshape2_1.4.1.tar.gz?raw=true</package>
+                    <package>https://cran.r-project.org/src/contrib/Archive/scales/scales_0.2.5.tar.gz</package>
+                    <package>http://cran.univ-lyon1.fr/src/contrib/proto_0.3-10.tar.gz?raw=true</package>
+                    <package>https://cran.r-project.org/src/contrib/Archive/ggplot2/ggplot2_1.0.1.tar.gz?raw=true</package>
+                    <package>https://cran.r-project.org/src/contrib/Archive/registry/registry_0.2.tar.gz</package>
+           <package>https://cran.r-project.org/src/contrib/Archive/xtable/xtable_1.7-4.tar.gz</package>
+           <package>http://cran.univ-lyon1.fr/src/contrib/pkgmaker_0.22.tar.gz?raw=true</package>
+           <package>http://cran.univ-lyon1.fr/src/contrib/rngtools_1.2.4.tar.gz?raw=true</package>
+           <package>http://cran.univ-lyon1.fr/src/contrib/gridBase_0.4-7.tar.gz?raw=true</package>
+           <package>https://cran.r-project.org/src/contrib/Archive/iterators/iterators_1.0.7.tar.gz</package>
+           <package>https://cran.r-project.org/src/contrib/Archive/foreach/foreach_1.4.2.tar.gz</package>
+           <package>https://cran.r-project.org/src/contrib/Archive/doParallel/doParallel_1.0.8.tar.gz</package>
+           <package>http://cran.univ-lyon1.fr/src/contrib/NMF_0.20.6.tar.gz?raw=true</package>
+           <package>http://cran.univ-lyon1.fr/src/contrib/gtools_3.5.0.tar.gz?raw=true</package>
+           <package>https://cran.r-project.org/src/contrib/Archive/gdata/gdata_2.16.1.tar.gz</package>
+           <package>http://cran.univ-lyon1.fr/src/contrib/bitops_1.0-6.tar.gz?raw=true</package>
+           <package>http://cran.univ-lyon1.fr/src/contrib/caTools_1.17.1.tar.gz?raw=true</package>
+           <package>http://cran.univ-lyon1.fr/src/contrib/png_0.1-7.tar.gz?raw=true</package>
+           <package>https://cran.r-project.org/src/contrib/Archive/gplots/gplots_2.17.0.tar.gz</package>
+           <package>https://cran.r-project.org/src/contrib/Archive/gridExtra/gridExtra_0.9.1.tar.gz</package>
+           <package>http://cran.univ-lyon1.fr/src/contrib/reshape_0.8.5.tar.gz?raw=true</package>
+           <package>http://cran.univ-lyon1.fr/src/contrib/getopt_1.20.0.tar.gz?raw=true</package>
+           <package>http://cran.univ-lyon1.fr/src/contrib/SnowballC_0.5.1.tar.gz?raw=true</package>
+           <package>http://cran.univ-lyon1.fr/src/contrib/lsa_0.73.1.tar.gz?raw=true</package>
+                </action>
+            </actions>
+        </install>
+    </package>
+</tool_dependency>