# HG changeset patch
# User iarc
# Date 1489407385 14400
# Node ID 47d4bc32a67c6ac74787eeaf28b8a358d800ff06
# Parent  78f68c1f8a328948f6c93a9d9cfe75dc4065e005
Uploaded

diff -r 78f68c1f8a32 -r 47d4bc32a67c tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Jun 28 02:59:52 2016 -0400
+++ b/tool_dependencies.xml	Mon Mar 13 08:16:25 2017 -0400
@@ -10,10 +10,10 @@
                   <repository changeset_revision="4d2fd1413b56" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                       <package name="R" version="3.1.2" />
                     </repository>
-                    <package>http://cran.univ-lyon1.fr/src/contrib/colorspace_1.2-6.tar.gz?raw=true</package>
+                    <package>https://cran.r-project.org/src/contrib/Archive/colorspace/colorspace_1.2-6.tar.gz</package>
                     <package>http://cran.r-project.org/src/contrib/Archive/stringi/stringi_0.4-1.tar.gz?raw=true</package>
                     <package>http://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz?raw=true</package>
-                    <package>http://cran.r-project.org/src/contrib/stringr_1.0.0.tar.gz?raw=true</package>
+                    <package>https://cran.r-project.org/src/contrib/Archive/stringr/stringr_1.0.0.tar.gz</package>
                     <package>http://cran.univ-lyon1.fr/src/contrib/RColorBrewer_1.1-2.tar.gz?raw=true</package>
                     <package>http://cran.univ-lyon1.fr/src/contrib/dichromat_2.0-0.tar.gz?raw=true</package>
                     <package>https://cran.r-project.org/src/contrib/Archive/munsell/munsell_0.4.2.tar.gz?raw=true</package>
@@ -22,9 +22,9 @@
                     <package>https://cran.r-project.org/src/contrib/Archive/plyr/plyr_1.8.3.tar.gz</package>
                     <package>https://cran.rstudio.com/src/contrib/Archive/digest/digest_0.6.8.tar.gz?raw=true</package>
                     <package>https://cran.r-project.org/src/contrib/Archive/gtable/gtable_0.1.2.tar.gz</package>
-                    <package>https://cran.r-project.org/src/contrib/reshape2_1.4.1.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/Archive/reshape2/reshape2_1.4.1.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/Archive/scales/scales_0.2.5.tar.gz</package>
-                    <package>http://cran.univ-lyon1.fr/src/contrib/proto_0.3-10.tar.gz?raw=true</package>
+                    <package>https://cran.r-project.org/src/contrib/Archive/proto/proto_0.3-10.tar.gz</package>
                     <package>https://cran.r-project.org/src/contrib/Archive/ggplot2/ggplot2_1.0.1.tar.gz?raw=true</package>
                     <package>https://cran.r-project.org/src/contrib/Archive/registry/registry_0.2.tar.gz</package>
            <package>https://cran.r-project.org/src/contrib/Archive/xtable/xtable_1.7-4.tar.gz</package>
@@ -42,7 +42,7 @@
            <package>http://cran.univ-lyon1.fr/src/contrib/png_0.1-7.tar.gz?raw=true</package>
            <package>https://cran.r-project.org/src/contrib/Archive/gplots/gplots_2.17.0.tar.gz</package>
            <package>https://cran.r-project.org/src/contrib/Archive/gridExtra/gridExtra_0.9.1.tar.gz</package>
-           <package>http://cran.univ-lyon1.fr/src/contrib/reshape_0.8.5.tar.gz?raw=true</package>
+           <package>https://cran.r-project.org/src/contrib/Archive/reshape/reshape_0.8.5.tar.gz</package>
            <package>http://cran.univ-lyon1.fr/src/contrib/getopt_1.20.0.tar.gz?raw=true</package>
            <package>http://cran.univ-lyon1.fr/src/contrib/SnowballC_0.5.1.tar.gz?raw=true</package>
            <package>http://cran.univ-lyon1.fr/src/contrib/lsa_0.73.1.tar.gz?raw=true</package>