annotate tool_dependencies.xml @ 1:cc6707a1e044 draft default tip

added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
author Ido Tamir <ido.tamir@imp.ac.at>
date Mon, 24 Sep 2012 16:46:21 +0200
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cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
parents:
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1 <?xml version="1.0"?>
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
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2 <tool_dependency>
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
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3 <package name="Mako" version="0.7.2">
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
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4 <install version="1.0">
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
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5 <actions>
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
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6 <action type="download_by_url">http://pypi.python.org/packages/source/M/Mako/Mako-0.7.2.tar.gz</action>
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
parents:
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7 <action type="make_directory">$INSTALL_DIR/lib/python</action>
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
parents:
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8 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
parents:
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9 <action type="set_environment">
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
parents:
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10 <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python</environment_variable>
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
parents:
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11 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
parents:
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12 </action>
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
parents:
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13 </actions>
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
parents:
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14 </install>
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
parents:
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15 <readme>
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
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16 prop_venn uses a templating engine called mako
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
parents:
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17 </readme>
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
parents:
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18 </package>
cc6707a1e044 added fixes from Brad Langhorst; https://bitbucket.org/account/notifications/read/3443176/patch-for-proportional-venn-tool-in-galaxy; added tool_dependencies for Mako template untested
Ido Tamir <ido.tamir@imp.ac.at>
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19 </tool_dependency>