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view data_manager_conf.xml @ 1:955a8d483fa3 draft

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author ieguinoa
date Tue, 10 Jul 2018 05:30:23 -0400
parents ac4fde07eaed
children c57bd7f3fb46
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<?xml version="1.0"?>
<data_managers>
<data_manager tool_file="data_manager/data_manager_fetch_gff.xml" id="data_manager_fetch_gff">
      <data_table name="all_gff">
            <output>
                <column name="value" />
                <column name="dbkey" />
                <column name="name" />
                <column name="path" output_ref="out_file">
                    <move type="file">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/gff/${path}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/gff/${path}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
     <data_table name="representative_gff">
            <output>
                <column name="value" />
                <column name="dbkey" />
                <column name="name" />
                <column name="path" output_ref="out_file">
                    <move type="file">
                        <source>${path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/representative_gff/${path}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/representative_gff/${path}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>

      <data_table name="__dbkeys__">
            <output>
                <column name="value" />
                <column name="name" />
                <column name="len_path" output_ref="out_file">
                    <move type="file">
                        <source>${len_path}</source>
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/len/${len_path}</target>
                    </move>
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/len/${len_path}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>
</data_managers>