Mercurial > repos > ieguinoa > data_manager_salmon_index_builder
comparison data_manager_conf.xml @ 0:6cd60ba8a842 draft
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author | ieguinoa |
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date | Tue, 14 Aug 2018 11:14:52 -0400 |
parents | |
children | c5dea2080109 |
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-1:000000000000 | 0:6cd60ba8a842 |
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1 <?xml version="1.0"?> | |
2 <data_managers> | |
3 <data_manager tool_file="data_manager/data_manager_fetch_gff.xml" id="data_manager_fetch_gff"> | |
4 <data_table name="all_gff"> | |
5 <output> | |
6 <column name="value" /> | |
7 <column name="dbkey" /> | |
8 <column name="name" /> | |
9 <column name="path" output_ref="out_file"> | |
10 <move type="file"> | |
11 <source>${path}</source> | |
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/gff/${path}</target> | |
13 </move> | |
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/gff/${path}</value_translation> | |
15 <value_translation type="function">abspath</value_translation> | |
16 </column> | |
17 </output> | |
18 </data_table> | |
19 <data_table name="representative_gff"> | |
20 <output> | |
21 <column name="value" /> | |
22 <column name="dbkey" /> | |
23 <column name="name" /> | |
24 <column name="path" output_ref="out_file"> | |
25 <move type="file"> | |
26 <source>${path}</source> | |
27 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/representative_gff/${path}</target> | |
28 </move> | |
29 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/representative_gff/${path}</value_translation> | |
30 <value_translation type="function">abspath</value_translation> | |
31 </column> | |
32 </output> | |
33 </data_table> | |
34 </data_manager> | |
35 </data_managers> |