Mercurial > repos > ieguinoa > data_manager_salmon_index_builder

diff data_manager/salmon_index_builder.xml @ 6:d22f69a2e80e draft

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author ieguinoa
date Tue, 23 Jul 2019 09:25:04 -0400
parents c5dea2080109
children cbe62bd6e149
line wrap: on
line diff
--- a/data_manager/salmon_index_builder.xml	Thu Jan 03 10:51:18 2019 -0500
+++ b/data_manager/salmon_index_builder.xml	Tue Jul 23 09:25:04 2019 -0400
@@ -1,8 +1,11 @@
 <tool id="salmon_index_builder_data_manager" name="Salmon" tool_type="manage_data" version="0.9.1">
     <description>index builder</description>
     <requirements>
-        <requirement type="package" version="0.9.1">salmon</requirement>
+        <requirement type="package" version="0.11.2">salmon</requirement>
     </requirements>
+   <macros>
+       <token name="@IDX_VERSION@">q5</token>
+   </macros>
     <command detect_errors="exit_code"><![CDATA[
         python '$__tool_directory__/salmon_index_builder.py' --output '${out_file}'
             --fasta_filename '${all_fasta_source.fields.path}'
@@ -10,6 +13,7 @@
             --fasta_description '${all_fasta_source.fields.name}'
             --kmer_size "${kmer_size}"
             --data_table_name salmon_indexes
+            --index_version @IDX_VERSION@
         ]]>
     </command>
     <inputs>