# HG changeset patch
# User ieguinoa
# Date 1563893443 14400
# Node ID 954d617c323dbdaade17e4ecc8fecdd8be9e7a69
# Parent  d22f69a2e80eaf43888289eccf23b29b4f1dce21
Uploaded

diff -r d22f69a2e80e -r 954d617c323d tool-data/salmon_indexes.loc.sample
--- a/tool-data/salmon_indexes.loc.sample	Tue Jul 23 09:25:04 2019 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,32 +0,0 @@
-# salmon_indexes_versioned.loc.sample
-# This is a *.loc.sample file distributed with Galaxy that enables tools
-# to use a directory of indexed data files. This one is for Salmon.
-# See the wiki: http://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup
-# First create these data files and save them in your own data directory structure.
-# Then, create a salmon_indexes_versioned.loc.sample file to use those indexes with tools.
-# Copy this file, save it with the same name (minus the .sample), 
-# follow the format examples, and store the result in this directory.
-# The file should include an one line entry for each index set.
-# The path points to the "basename" for the set, not a specific file.
-# It has four text columns seperated by TABS.
-#
-# <unique_build_id>	<dbkey>	<display_name>	<file_base_path> <version>
-#
-# The <version> column can be retrieved from the header.json file in the index folder. e.g   "IndexVersion": "q5"
-
-
-
-# So, for example, if you had sacCer3 indexes stored in:
-#
-#    /depot/data2/galaxy/sacCer3/salmon_indexes/
-#
-# then the salmon_indexes.loc entry could look like this:
-#
-#sacCer3	sacCer3	S. cerevisiae Apr. 2011 (SacCer_Apr2011/sacCer3) (sacCer3)	/depot/data2/galaxy/sacCer3/salmon_indexes/version_3/	q6
-#
-#More examples:
-#
-#mm10	mm10	Mouse (mm10)	/depot/data2/galaxy/salmon_indexes/mm10/version_2	q4
-#dm3	dm3		D. melanogaster (dm3)	/depot/data2/galaxy/salmon_indexes/dm3/version_1	q5
-#
-#
diff -r d22f69a2e80e -r 954d617c323d tool-data/salmon_indexes_versioned.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/salmon_indexes_versioned.loc.sample	Tue Jul 23 10:50:43 2019 -0400
@@ -0,0 +1,32 @@
+# salmon_indexes_versioned.loc.sample
+# This is a *.loc.sample file distributed with Galaxy that enables tools
+# to use a directory of indexed data files. This one is for Salmon.
+# See the wiki: http://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup
+# First create these data files and save them in your own data directory structure.
+# Then, create a salmon_indexes_versioned.loc.sample file to use those indexes with tools.
+# Copy this file, save it with the same name (minus the .sample), 
+# follow the format examples, and store the result in this directory.
+# The file should include an one line entry for each index set.
+# The path points to the "basename" for the set, not a specific file.
+# It has four text columns seperated by TABS.
+#
+# <unique_build_id>	<dbkey>	<display_name>	<file_base_path> <version>
+#
+# The <version> column can be retrieved from the header.json file in the index folder. e.g   "IndexVersion": "q5"
+
+
+
+# So, for example, if you had sacCer3 indexes stored in:
+#
+#    /depot/data2/galaxy/sacCer3/salmon_indexes/
+#
+# then the salmon_indexes.loc entry could look like this:
+#
+#sacCer3	sacCer3	S. cerevisiae Apr. 2011 (SacCer_Apr2011/sacCer3) (sacCer3)	/depot/data2/galaxy/sacCer3/salmon_indexes/version_3/	q6
+#
+#More examples:
+#
+#mm10	mm10	Mouse (mm10)	/depot/data2/galaxy/salmon_indexes/mm10/version_2	q4
+#dm3	dm3		D. melanogaster (dm3)	/depot/data2/galaxy/salmon_indexes/dm3/version_1	q5
+#
+#