Mercurial > repos > ifb-elixirfr > abromics_extractor_summarize

annotate test-data/plasmidfinder/plasmid_hit.fasta @ 1:39137acb0806 draft

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planemo upload for repository https://gitlab.com/ifb-elixirfr/abromics/galaxy-tools/-/tree/galaxy_dev/abromics_galaxy_json_extractor?ref_type=heads commit 8db8564ece9607d015d3730e06854416011ec05c
author ifb-elixirfr
date Mon, 28 Aug 2023 15:05:54 +0000
parents eb95c9ca5c60
children
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eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
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1 >contig00051 len=2083 cov=17.5 corr=0 origname=NODE_51_length_2083_cov_17.526074_pilon sw=shovill-spades/1.1.0 date=20230213:127..897:repUS12_2_repB(SAP014A)_GQ900379:88.013699
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2 ATGTGTCCTAATAGTAGCATTTATTCAGATGAAAAATCAAGGGTTTTAGTGGACAAGACA
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3 AAAAGTGGAAAAGTGAGACCATGGAGAGAAAAGAAAATCGCTAATGTTGATTACTTTGAA
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4 CTTCTGCATATTCTTGAATTTAAAAAGGCTGAAAGAGTAAAAGATTGTGCTGAAATATTA
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5 GAGTATAAACAAAATCGTGAAACAGGCGAAAGAAAGTTGTATCGAGTGTGGTTTTGTAAA
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6 TCCAGGCTTTGTCCAATGTGCAACTGGAGGAGAGCAATGAAACATGGCATTCAGTCACAA
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7 AAGGTTGTTGCTGAAGTTATTAAACAAAAGCCAACAGTTCGTTGGTTGTTTCTCACATTA
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8 ACAGTTAAAAATGTTTATGATGGCGAAGAATTAAATAAGAGTTTGTCAGATATGGCTCAA
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9 GGATTTCGCCGAATGATGCAATATAAAAAAATTAATAAAAATCTTGTTGGTTTTATGCGT
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10 GCAACGGAAGTGACAATAAATAATAAAGATAATTCTTATAATCAGCACATGCATGTATTG
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11 GTATGTGTGGAACCAACTTATTTTAAGAATACAGAAAACTACGTGAATCAAAAACAATGG
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12 ATTCAATTTTGGAAAAAGGCAATGAAATTAGACTATGATCCAAATGTAAAAGTTCAAATG
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13 ATTCGACCGAAAAATAAATATAAATCGGATATACAATCGGCAATTGACGAAACTGCAAAA
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14 TATCCTGTAAAGGATACGGATTTTATGACCGATGATGAAGAAAAGAATTTGAAACGTTTG
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15 TCTGATTTGGAGGAAGGTTTACACCGTAAAAGGTTAATCTCCTATGGTGGTTTGTTAAAA
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16 GAAATACATAAAAAATTAGGTTCTGTTGCAAAGTAA
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17 >contig00026 len=35051 cov=66.2 corr=0 origname=NODE_26_length_35051_cov_66.162954_pilon sw=shovill-spades/1.1.0 date=20230213:21156..22313:repUS40_1_repB(pE394)_KP399637:100.000000
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18 ATGCTCAATTCTAGTATATCACGAAAGGTACTTATGATGAATGACATTCAAAACAAAAAA
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19 ATAGTTCAAGACAATGATTTAATTGTAAGTGTCGCAAAAATGGATAAGACACCCATGAAA
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20 TTTTTTGAATTAGCAGTCGCCAGTTTAGATATTAAGAATATTCCTGCTGATCGAACTGTT
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21 CATGTTTCTAAAGAATTATTGTATTCCTTCTTTGACGCAAAAAGTGAAAATAAACATACA
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22 CGCTTTAAAGACGCTGTTCTAACTGTTCATGAGCAAGCAGTGTTTCTAATGCGAGAATTA
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23 AATGAGCGCAAAGGAAAATATGAATATCAAGTGATTAGTCCATTGGAAAGAACTTCTTGG
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24 AATGATTATGAAGATATTGTTTCTTTTAAGTTTACTGAATCTATTTTTCCGTATCTGATA
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25 GATTTAAAAGGAACATACACGCAATATTTATTGTCAGACATTGCACAACTAAATAGCAAG
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26 TATTCCATCATTATTTATAAATGGTTAAGCATGAATTATAACCAGTATGACTATTATAAT
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27 GCAAAAGGTGGGCGCAGAGAAAAACAGTTAAATGAATATAAAAATCCAATTATTCCGATT
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28 GAAGAATTACGAAGAATAACTGATACAGAAAAAGAGTATTTAAAATTTTCCAATTTTGAA
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29 GCAAGAGTTTTAAAAAAAGCTGTTGAAGAAATCAACCAATTTACAGTTTTAAATGCGACG
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30 TATGAAAAAATAAAAAAAGGAAACCGAATTGGTTCGATTCAGTTCCATATTACGAAAAAA
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31 CAAATTGCTCCTAATCCTTCTTACAAAATTGGCGATTCTGTGTATGAAGCGCAACAAGCA
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32 GAAAAAGAACAAAATCAAATTACTTTATTTGCGCAGGCAATGCAAAGTCAATACACTACC
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33 ATTTTGATGGAAAATATGTTGATTGGGTACAAAGATATGCAAGATATTGAATTAATGGCA
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34 AGCTTGCAAGAAATGGTTTATCCCTTGTATGACGAGTTGAAAACTCTTAGAGGATTAGAC
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35 GGTGTGAGAAATCACTTAGAATACGTTTCAAGAAAACAAATAGGCTATTCTAAAACTAAT
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36 ATTGTCAAGTATTTAAAAACAGCTATCACACAATATTTGCCAACGGTAAAAATGATGGAT
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37 ATGGATAATAGAGTGTAA
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38 >contig00023 len=45935 cov=46.6 corr=0 origname=NODE_23_length_45935_cov_46.624847_pilon sw=shovill-spades/1.1.0 date=20230213:3630..4643:rep9b_2_prgW(EF62pC)_CP002494:100.000000
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39 ATGAACGATTTTCAATTTATTTCAGCTAATGAAACCTATAGAAATTTGTATTACCAATTA
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40 CCTAAAGTACTTTTTACATCAGAATTTTATAAGACTATGTCTAATGATAGTAAAATAGCT
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41 TACGCAATGTTGCAAGACCGATGTGAATATTCAATACAAAATAATTGGATTGATCAAGAT
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42 GGGCATATATATTTTATCTTTACACGAAATGAACTGATGGATATTTTAGGGTGTAAAGAA
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43 AATAAAATTGCAAAAATAAAAAAAGAATTAAAAGACAAAAATTTACTTTATGAAAAACGT
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44 ATTCCTCCGAAAAAACTCTCTACTGGTGAATTCAAAAACTATCCAAACAGATTGTATTTA
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45 GGTAAGCTGGAAGTTTCAGCAACAGATGTTTACGCCATCAGTAATGCTAGCTATACAAAT
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46 GAGTTTCCCGAAAGTGGGAAAAACCAACCTTCGGATAAACATGATAAAATCGGCATTTCT
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47 TTCGAAAGTGGGAAAAACCAACGTCCAGAAGAATCCAATAATACCAGTACTTTGTTCGAA
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48 AGTGGGAAAAACCAACCCAATCTATATCTAACTAATTCTTTAGATACAATAGATACAATA
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49 GATACTGAAAAAGAACGATTGCAACAACAATTATTGCTCGATCAATTTTCAGAAGTTCAA
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50 GAGCATACATTTCTTAGCAAAAATAGCTTAAAATTTATTGCTGCCTTTTCTGATACTATT
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51 CAAGAAGCACATGAAATGGTTGGAACAATTATTCGTGCTAAAACTAAAGTAGAAAAAGAA
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52 TACAATATCGTTCTAATTGGTGAAGATTATCAAGAAGAAATAGACAAATGTTTGCGTCGT
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53 GTGATGCATAAAATCAAGACAGATTCTACTGTAAAAAGTCCAAAAGGCCTATTCTACAAG
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54 TCGTTTTACAATTTATTTGTTGAATGTACAATAGAGAAAAAAAGTCATTTAAATAAAAAT
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55 AGTACGGACAACACCCCAGAAATAACTACACATAACTGGATTGAGTATCAATAA
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56 >contig00048 len=5336 cov=19.5 corr=0 origname=NODE_48_length_5336_cov_19.468228_pilon sw=shovill-spades/1.1.0 date=20230213:3276..4214:rep7a_8_ORF11(pRE25)_X92945:100.000000
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57 ATGAAGAAAATTGATGAAAAATTAGCTGCAGAAATCTCACTAAAAAAACCGGCCGTCTCT
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58 AATAGCCGGTTAAGTAATAGCCGGTTAAGTGGTCAAACTTTGGGAAAATCTCAACCCGCA
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59 TTAAGTTTTGATGCCATGACAATCGTTGGAAATTTGAACAAAACTAATGCTAAAAAGCTA
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60 TCTGACTTTATGAGTGTAGAGCCACAAATACGACTTTGGGATATACTTCAAACAAAGTTT
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61 AAAGCTAAGGCACTTCAAGAAAAAGTTTATATCGAATATGACAAAGTAAAAGCAGATACT
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62 TGGGATAGACGTAATATGCGTGTTGAATTTAATCCCAATAAACTCACACATGAAGAAATG
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63 ATTTGGTTAAAACAAAATATTATCGACTACATGGAAGATGACGGTTTTACAAGATTAGAC
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64 TTAGCTTTTGATTTTGAAGATGATTTGAGCGATTACTATGCAATGACTGATAAAGCAGTT
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65 AAGAAAACTGTTTTTTATGGTCGTAATGGCAAGCCAGAAACAAAATATTTTGGTGTCCGT
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66 GATAGTGATAGATTTATTAGAATTTATAATAAAAAACAAGAACGTAAAGATAACGCAGAT
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67 GTTGAAGTTGTGTCTGAACATTTATGGCGTGTAGAAGTTGAATTAAAAAGAGATATGGTT
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68 GATTACTGGAATGATTGTTTTAATGATTTACACATCTTGAAACCTGCGTGGGCTACTTTA
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69 GAAAAAATTAATGAGCAAGCTATGGTTTATACTTTGTTGCATGAAGAAAGTATGTGGGGA
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70 AAGCTAAGTAAGAATACTAAGACTAAATTTAAAAAATTGATTAGAGAAATATCTCCAATT
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71 GATTTAACGGAATTAATGAAATCGACTTTAAAAGCGAACGAAAAACAATTGCAAAAGCAG
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72 ATTGATTTTTGGCAACGTGAATTTAGGTTTTGGAAGTAA
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73 >contig00040 len=12074 cov=69.2 corr=0 origname=NODE_40_length_12074_cov_69.205993_pilon sw=shovill-spades/1.1.0 date=20230213:8225..9430:repUS43_1_CDS12738(DOp1)_CP003584:100.000000
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74 TTGGAGGGATTTTTACTGAATGAACAAACTTGGTTACAGCATTTAAAAGAAAAACGCTTG
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75 GCTTATGGACTATCTCAAAACCGTTTAGCTGTTGCGACTGGTATTACAAGGCAGTATCTA
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76 AGCGATATTGAAACAGGAAAAGTCAAGCCATCAGAGGATTTACAGCAGTCCCTTTGGGAA
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77 GCTCTGGAACGCTTCAATCCCGACGCTCCCCTTGAAATGCTGTTTGATTATGTAAGAATT
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78 CGCTTTCCGACAACAGACGTACAGCAGGTGGTCGAAAACATCTTACAACTGAAACTGTCC
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79 TATTTTCTTCATGAGGACTATGGTTTCTATTCTTATTCAGAGCATTATGCTTTAGGCGAC
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80 ATATTCGTCCTTTGCTCCCATGAACTGGACAAAGGAGTTCTGGTGGAATTGAAAGGTCGT
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81 GGGTGCAGACAATTTGAAAGCTATCTTCTGGCACAACAAAGAAGCTGGTATGAGTTCTTT
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82 ATGGACGTTTTGGTGGCTGGCGGTGTGATGAAACGCCTTGACCTTGCCATTAACGATAAG
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83 ACAGGGATTTTAAATATCCCTGTACTCACTGAAAAGTGCCAACAGGAAGAATGTATCTCC
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84 GTCTTCCGCAGTTTTAAAAGCTATCGCAGTGGCGAACTGGTACGCAAAGAGGAAAAGGAA
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85 TGTATGGGAAACACCCTCTATATCGGTTCATTACAAAGTGAAGTTTATTTCTGTATCTAT
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86 GAAAAGGACTACGAGCAGTACAAGAAAAATGATATTCCCATTGAAGACGCAGAAGTAAAA
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87 AACCGTTTTGAGATTCGATTGAAAAATGAGCGTGCCTATTATGCAGTCCGTGATTTACTC
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88 GTCTATGACAATCCAGAGCATACCGCCTTTAAAATTATCAATCGGTATATCCGTTTTGTA
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
ifb-elixirfr
parents:
diff changeset
89 GATAAAGACGATTCCAAACCTCGTTCTGATTGGAAACTGAATGAAGAATGGGCTTGGTTT
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
ifb-elixirfr
parents:
diff changeset
90 ATTGGGAACAATCGTGAACGATTAAAACTAACCACAAAACCAGAGCCTTACTCCTTCCAA
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
ifb-elixirfr
parents:
diff changeset
91 AGGACGCTGAACTGGCTATCTCATCAAGTTGCCCCGACCTTAAAGGTTGCGATTAAACTT
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
ifb-elixirfr
parents:
diff changeset
92 GATGAAATCAACCAGACGCAGGTTGTAAAAGACATTCTCGACCATGCGAAACTGACAGAC
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
ifb-elixirfr
parents:
diff changeset
93 CGACACAAGCAGATTTTGAAGCAACAGTCAGTAAAAGAACAGGACGTGATAACAACAAAA
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
ifb-elixirfr
parents:
diff changeset
94 AAATAA