abromics_extractor_summarize: test-data/quast/quast

annotate test-data/quast/quast_report.html @ 8:ce112a6105fa draft

planemo upload for repository https://gitlab.com/ifb-elixirfr/abromics/galaxy-tools commit 8623190a78f9aaaf9a8ec4f039af36307af34e3f

author	ifb-elixirfr
date	Wed, 27 Mar 2024 13:53:04 +0000
parents	eb95c9ca5c60
children

rev	line source
0 eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1 <!DOCTYPE html>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2 <html lang="en">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3 <head>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4 <meta http-equiv="Content-Type" content="text/html;charset=utf-8" >
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	5
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	6 <style rel="stylesheet">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	7 /*!
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	8 * Bootstrap v2.0.4
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	9 *
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	10 * Copyright 2012 Twitter, Inc
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	11 * Licensed under the Apache License v2.0
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	12 * http://www.apache.org/licenses/LICENSE-2.0
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	13 *
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	14 * Designed and built with all the love in the world @twitter by @mdo and @fat.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	15 */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	16 .clearfix{*zoom:1;}.clearfix:before,.clearfix:after{display:table;content:"";}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	17 .clearfix:after{clear:both;}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	18 .hide-text{font:0/0 a;color:transparent;text-shadow:none;background-color:transparent;border:0;}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	19 .input-block-level{display:block;width:100%;min-height:28px;-webkit-box-sizing:border-box;-moz-box-sizing:border-box;-ms-box-sizing:border-box;box-sizing:border-box;}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	20 .tooltip{position:absolute;z-index:1020;display:block;visibility:visible;padding:5px;font-size:11px;opacity:0;filter:alpha(opacity=0);}.tooltip.in{opacity:0.8;filter:alpha(opacity=80);}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	21 .tooltip.top{margin-top:-2px;}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	22 .tooltip.right{margin-left:2px;}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	23 .tooltip.bottom{margin-top:2px;}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	24 .tooltip.left{margin-left:-2px;}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	25 .tooltip.top .tooltip-arrow{bottom:0;left:50%;margin-left:-5px;border-left:5px solid transparent;border-right:5px solid transparent;border-top:5px solid #000000;}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	26 .tooltip.left .tooltip-arrow{top:50%;right:0;margin-top:-5px;border-top:5px solid transparent;border-bottom:5px solid transparent;border-left:5px solid #000000;}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	27 .tooltip.bottom .tooltip-arrow{top:0;left:50%;margin-left:-5px;border-left:5px solid transparent;border-right:5px solid transparent;border-bottom:5px solid #000000;}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	28 .tooltip.right .tooltip-arrow{top:50%;left:0;margin-top:-5px;border-top:5px solid transparent;border-bottom:5px solid transparent;border-right:5px solid #000000;}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	29 .tooltip-inner{max-width:200px;padding:3px 8px;color:#ffffff;text-align:center;text-decoration:none;background-color:#000000;-webkit-border-radius:4px;-moz-border-radius:4px;border-radius:4px;}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	30 .tooltip-arrow{position:absolute;width:0;height:0;}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	31
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	32 </style>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	33
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	34 <style rel="stylesheet">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	35 /* Main things */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	36 html, body, div, span, h1, h3, h4, h5, h6, blockquote, pre,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	37 em, sub, sup, dl, dt, dd, ol, ul, li,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	38 fieldset, form, label,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	39 table, caption, tbody, tfoot, thead,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	40 article, aside, canvas, details, figure, figcaption, footer, header, hgroup,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	41 menu, nav, output, section, time {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	42 margin: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	43 padding: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	44 border: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	45 font-size: 100%;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	46 font: inherit;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	47 vertical-align: baseline;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	48 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	49 body {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	50 margin: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	51 font-family: Lucida Grande, Verdana, Arial, sans-serif;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	52 font-size: 12px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	53 color: black;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	54 padding-bottom: 30px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	55 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	56 a {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	57 text-decoration: none;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	58 /color: #0c4f72;/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	59 color: #0077B5;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	60 border-bottom: 1px solid #487b95;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	61 border-color: #487b95; /* #487b95 */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	62 border-color: rgba(12, 79, 114, 0.2); /* #0c4f72; / / #a0d2eb; / /rgba(0, 88, cc, 0.3);*/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	63 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	64 a:visited {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	65 text-decoration: none;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	66 color: #8C66B2;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	67 border-bottom: 1px solid #8c66b2;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	68 border-color: #8c66b2;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	69 border-color: rgba(102, 51, 153, 0.2);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	70 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	71 a:hover {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	72 text-decoration: none;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	73 color: #b33; /* #0088cc; */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	74 border-bottom: 1px solid #ffcccc;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	75 border-color: #ffcccc;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	76 border-color: rgba(255, 0, 0, 0.2); /* #55b2e0; / /#005580;*/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	77 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	78 a.dark_bg_link {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	79 color: white; /* #0088cc; */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	80 border-bottom: 1px solid #cccccc;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	81 border-color: #cccccc;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	82 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	83 a.dark_bg_link:hover {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	84 color: white; /* #0088cc; */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	85 border-bottom: 1px solid white;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	86 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	87
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	88 .leading_link_dot {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	89 border-bottom: white solid 1px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	90 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	91
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	92 a.header_link, a.header_link:hover, a.header_link:visited {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	93 color: black;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	94 border-bottom: 1px solid #bbb;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	95 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	96
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	97
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	98 .dotted-link {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	99 cursor: pointer;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	100 text-decoration: none;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	101 /color: #0c4f72;/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	102 color: #0077B5;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	103 border-bottom: 1px dashed #487b95;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	104 border-color: #487b95; /* #487b95 */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	105 border-color: rgba(12, 79, 114, 0.2);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	106 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	107 .dotted-link:hover {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	108 text-decoration: none;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	109 color: #b33 !important;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	110 border-bottom: 1px dashed #b33 !important;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	111 border-color: rgba(255, 0, 0, 0.2) !important;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	112 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	113 .js:visited {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	114 color: #0077B5;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	115 border-bottom: 1px dashed #487b95;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	116 border-color: #487b95;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	117 border-color: rgba(12, 79, 114, 0.2);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	118 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	119
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	120 .selected-switch {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	121 background-color: #fafad2;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	122 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	123
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	124 .json-code {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	125 display: none;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	126 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	127 .smallcapitals {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	128 font-size: .875em;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	129 letter-spacing: .15em;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	130 margin-right: -.15em;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	131 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	132 .highlight {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	133 background-color:#FFF9B5;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	134 padding: 0 3px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	135 margin-left: -3px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	136 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	137
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	138 ul.list {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	139 list-style-type: none;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	140 padding: 0 0 0 2em;
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eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	142 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	143 ul.list li {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	144 margin-bottom: 0.7em;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	145 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	146
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	147 ul.mdash {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	148 margin: -1em 0 0 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	149 padding: 0 0 0 2em;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	150 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	151 ul.mdash li {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	152 margin-bottom: 0.7em;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	153 list-style-type: none;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	154 text-indent: -1.3em;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	155 behavior: expression(!this.before ? this.before = this.innerHTML = '— ' + this.innerHTML : '');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	156 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	157 ul.mdash li:before {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	158 content: '\2014\a0';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	159 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	160
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	161 .small_line_indent {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	162 height: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	163 margin-top: -7px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	164 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	165 /************/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	166
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	167 /* Tooltips */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	168 .tooltip {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	169 font-size: 0.9em;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	170 margin-bottom: 5px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	171 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	172 .tooltip.in {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	173 opacity: 1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	174 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	175 .tooltip-inner {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	176 text-align: left;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	177 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	178 .tooltip-link,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	179 .tooltip-link:visited {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	180 text-decoration: none;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	181 color: #000;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	182 border-bottom: 1px dashed #bbb;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	183 cursor: hand;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	184 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	185 .tooltip-link:hover {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	186 text-decoration: none;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	187 color: #b33;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	188 border-bottom: 1px dashed #b33;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	189 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	190 /************/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	191
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	192 /*********/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	193
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	194 .hs {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	195 /* Полупробел для
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	196 разделения разрядов чисел:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	197 10<span class="hs"></span>000 */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	198 margin-left: .2em;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	199 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	200
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	201 .rhs {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	202 /* Полупробел на случай,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	203 если реальный пробел важен,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	204 например между ценой и валютой:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	205 1<span class="rhs"> </span>$ */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	206 font-size: 50%;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	207 line-height: 1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	208 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	209
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	210 /9490<span class="rhs"> </span>€<br/>/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	211 /12<span class="hs"></span>650<span class="rhs"> </span>$<br/>/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	212 /379<span class="hs"></span>000<span/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	213 /class="rhs"> </span><span class="b-rub">Р</span><br/>/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	214 /100<span class="hs"></span>500<span class="rhs"> </span>+/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	215
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	216 /* for wrapping long words with no spaces */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	217 /* http://stackoverflow.com/questions/3247358/css-how-do-i-wrap-text-with-no-whitespace-inside-a-td */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	218 .wrapword {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	219 white-space: -moz-pre-wrap !important; /* Mozilla, since 1999 */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	220 white-space: -pre-wrap; /* Opera 4-6 */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	221 white-space: -o-pre-wrap; /* Opera 7 */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	222 white-space: pre-wrap; /* css-3 */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	223 word-wrap: break-word; /* Internet Explorer 5.5+ */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	224 word-break: break-all;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	225 white-space: normal;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	226 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	227
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	228
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	229 .space_1px {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	230 height: 1px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	231 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	232 .space_2px {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	233 height: 2px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	234 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	235 .space_3px {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	236 height: 3px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	237 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	238 .space_4px {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	239 height: 4px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	240 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	241 .space_5px {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	242 height: 5px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	243 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	244 .space_6px {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	245 height: 6px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	246 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	247 .space_7px {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	248 height: 7px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	249 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	250 .space_8px {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	251 height: 8px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	252 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	253 .space_9px {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	254 height: 9px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	255 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	256 .space_10px {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	257 height: 10px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	258 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	259 .layout-table {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	260 width: 99%;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	261 border-spacing: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	262 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	263
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	264 .layout-table td.layout-table-td {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	265 vertical-align: top;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	266 padding: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	267 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	268 .layout-table td.layout-table-fst-td {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	269 min-width: 400px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	270 padding-right: 50px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	271 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	272 .layout-table td.layout-table-snd-td {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	273 min-width: 200px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	274 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	275 .layout-table td.layout-table-trd-td {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	276 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	277
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	278 .top-panel {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	279 background-color: #444;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	280 color: white;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	281 min-width: 650px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	282 padding: 8px 10px 0 147px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	283 min-height: 70px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	284 text-shadow: -1px -1px 0 #111;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	285 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	286 .top-panel span {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	287 color: white;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	288 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	289 .top-panel a {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	290 color: white;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	291 border-bottom: 1px solid white;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	292 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	293 #to_main_menu_button a {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	294 border-bottom: none;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	295 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	296 .page_title {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	297 margin-top: -3px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	298 margin-bottom: -3px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	299 color: white;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	300 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	301 .page_subtitle {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	302 line-height: 100%;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	303 white-space: nowrap;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	304 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	305 .content {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	306 margin-left: 147px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	307 width: 90%;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	308 /padding-top: 20px;/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	309 margin-bottom: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	310 /padding-bottom: 50px;/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	311 /{# padding-right: 20px;#}/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	312 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	313 .p_after_content {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	314 margin-left: 147px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	315 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	316 .links_after_content{
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	317 font-size: 14px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	318 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	319
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	320 p {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	321 display: block;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	322 font-size: 12px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	323 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	324
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	325 h1 {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	326 display: block;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	327 font-size: 26px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	328 padding: 0 -3px 0 5px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	329 -webkit-margin-before: 5px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	330 -webkit-margin-after: 0px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	331 -webkit-margin-start: 0px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	332 -webkit-margin-end: 0px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	333 font-weight: bold;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	334 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	335
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	336 #header {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	337 display: block;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	338 width: 100%;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	339 margin-bottom: 10px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	340 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	341
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	342 .logo_img {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	343 height: 40px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	344 margin-bottom: -10px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	345 margin-left: -6px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	346 margin-right: -7px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	347 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	348 </style>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	349
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	350 <style rel="stylesheet">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	351 .report-and-plots {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	352 margin-top: 15px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	353 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	354
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	355 /****************/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	356 /* REPORT TABLE */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	357 .report {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	358 margin: 0 100px 50px 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	359 float: left;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	360 font-size: 1em;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	361 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	362
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	363 #main_report {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	364 /min-width: 600px;/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	365 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	366
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	367 /#extended_link {/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	368 /margin-top: 5px;/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	369 /}/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	370
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	371 #ref_report {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	372 /min-width: 300px;/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	373 margin-right: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	374 margin-bottom: 20px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	375 /margin-right: 200px;/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	376 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	377
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	378 .report td {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	379 margin: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	380 padding: 2px 0.6em 0 14px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	381 /min-width: 100px;/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	382 max-width: 400px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	383 white-space: nowrap;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	384 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	385 .report td.number {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	386 text-align: right;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	387 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	388
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	389 .report tr.top_row_tr td,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	390 .report tr.group_header td {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	391 font-weight: bold;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	392 border-bottom: 1px solid #ddd;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	393 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	394 .report tr.group_header td {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	395 height: 20px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	396 vertical-align: bottom;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	397 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	398
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	399 #ref_report tr.top_row_tr td,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	400 #ref_report tr.group_header td {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	401 font-weight: normal;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	402 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	403
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	404 .report tr td:first-child {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	405 padding-left: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	406 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	407 .report tr td:last-child {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	408 padding-right: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	409 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	410
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	411 .report tr.row_hidden, tr.group_empty {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	412 display: none;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	413 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	414
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	415 .report tr.secondary_hidden {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	416 display: none;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	417 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	418
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	419 /.report td.secondary_td {/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	420 /padding-left: 10px !important;/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	421 /}/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	422
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	423 span.heatmap_legend {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	424 font-size: 11px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	425 display: inline-block;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	426 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	427
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	428 #heatmap_header {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	429 margin-right: 30px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	430 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	431
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	432 #combined_reference_length {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	433 padding-top: 1px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	434 padding-bottom: 15px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	435 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	436
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	437 span.metric-name.expandable {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	438 margin-left: -13px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	439 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	440
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	441 span.metric-name.secondary {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	442 margin-left: 13px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	443 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	444
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	445 span.metric-name.expandable.collapsed::before {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	446 content: '+ ';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	447 color: #CCC;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	448 cursor: pointer;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	449 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	450
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	451 span.metric-name.expandable.expanded::before {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	452 content: '\2212\a0'; /* &minus&nbsp */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	453 color: #CCC;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	454 cursor: pointer;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	455 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	456
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	457 .report_legend {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	458 padding-left: 15px; /* compensate drag handles */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	459 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	460
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	461 #contigs_are_ordered {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	462 z-index: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	463 position: relative;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	464 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	465
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	466
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	467 /*.report .report-table-header {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	468 font-weight: bold;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	469 }*/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	470
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	471 /*.report thead td {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	472 border-bottom: 1px solid #bbb;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	473 }*/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	474
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	475
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	476 /*************/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	477 /* Draggable */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	478 table.moving_table {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	479 box-shadow: -0px 0px 5px 1px #888888;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	480 -moz-box-shadow: -0px 0px 5px 1px #888888;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	481 -webkit-box-shadow: -0px 0px 5px 1px #888888;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	482 /outline: 1px solid #888888;/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	483 background-color: white;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	484 z-index: 3 !important;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	485 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	486
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	487 table.draggable .drag_handle {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	488 padding: 2px 1px 0 1px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	489 margin: 0 2px 0 1px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	490
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	491 cursor: grab;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	492 cursor: -moz-grab;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	493 cursor: -webkit-grab;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	494 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	495
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	496 table.draggable .drag_handle .drag_image {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	497 height: 9px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	498 width: 9px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	499 display: inline-block;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	500 background: url("data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAkAAAAJCAIAAABv85FHAAAACXBIWXMAAAsTAAALEwEAmpwYAAAAiElEQVQImV2OsQ3FIAxEz2AhCAukyATZf5ZMQI8okZUjhfWj6F/pd09n6b1f1wUgxkgSAACS53lqSmnfdxHBLyJCMucsc877vv201nobKSUl2VoLIeATksdxKEmf+UqOxczGGDHGP7Ztm5qZmfmkYx8upehaq/fu4P2WZK1VAdRaAbjqXghBVR9BvlQcgtQsKgAAAABJRU5ErkJggg==") no-repeat;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	501 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	502
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	503 table.draggable .drag_handle:active,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	504 table.draggable td.cell_of_moving_table .drag_handle {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	505 cursor: grabbing !important;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	506 cursor: -moz-grabbing !important;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	507 cursor: -webkit-grabbing !important;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	508 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	509
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	510 /* Override the styles for the first and the last columns of the table.report.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	511 The cloned table contains a single column which is both first and last,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	512 and we don't need it to inherit those styles. */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	513 table.draggable td.cell_of_moving_table {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	514 padding-left: 14px !important;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	515 padding-right: 0.6em !important;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	516 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	517
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	518 table.draggable td.hovered_column_td {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	519 background-color: #cccccc;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	520 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	521
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	522 table.draggable td.second_through_last_col_headers_td {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	523 padding-left: 0 !important; /* compensate handle images */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	524 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	525
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	526 table.draggable td.cell_of_empty_space * {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	527 visibility: hidden;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	528 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	529
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	530 table.draggable td.cell_of_empty_space {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	531 border: none !important;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	532 /*border-left: 1px solid #888888;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	533 border-right: 1px solid #888888;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	534 margin-right: -1px !important;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	535 margin-left: -1px !important; */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	536 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	537
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	538 /*table.draggable td.bottom_cell_of_empty_space {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	539 border-bottom: 1px solid #888888 !important;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	540 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	541
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	542 table.draggable td.top_cell_of_empty_space {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	543 border-top: 1px solid #888888 !important;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	544 /*margin-top: -1px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	545 }*/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	546
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	547 table.draggable td.top_cell_of_empty_space {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	548 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	549
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	550 table.draggable td.left_to_cell_of_empty_space {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	551 /outline-left: 1px solid #888888;/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	552 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	553
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	554 table.draggable td.right_to_cell_of_empty_space {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	555 /outline-right: 1px solid #888888;/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	556 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	557
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	558 /********/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	559 /* META */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	560 #main_ref_genome {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	561
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	562 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	563
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	564 table#refgenome td.last_row {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	565 border-top: 1px solid #ddd;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	566 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	567
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	568 /************/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	569 /* PLOTTING */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	570 .plot-switch {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	571 margin-left: 10px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	572 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	573
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	574 .plot-mis-type-switch {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	575 margin-left: 23px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	576 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	577
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	578 .plot-wrapper {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	579 padding-right: 80px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	580 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	581
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	582 .plot-header {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	583 margin-left: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	584 font-weight: bold;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	585 height: 1.5em;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	586 display: block;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	587 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	588
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	589 .plots {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	590 margin-left: -30px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	591 margin-right: 70px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	592 margin-top: 2px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	593 margin-bottom: 50px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	594 float: left;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	595 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	596 .plots td {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	597 vertical-align: top;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	598 white-space: nowrap;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	599 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	600
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	601 .plots div#plots-switches, tr#plots-into-tr p {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	602 padding-left: 30px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	603 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	604
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	605 #legend-placeholder {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	606 min-width: 80px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	607 margin-top: -2px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	608 margin-left: -5px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	609 position: relative;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	610 z-index: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	611 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	612
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	613 .legendColorBox div {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	614 display: none;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	615 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	616
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	617 #legend-placeholder td {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	618 vertical-align: top;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	619 white-space: nowrap;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	620 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	621
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	622 #plot-placeholder {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	623 width: 986px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	624 height: 600px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	625
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	626 /* for auto sizing plots when resizing the page
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	627 min-width: 500px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	628 min-height: 500px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	629 width: 100%;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	630 min-height: 400px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	631 height: 50%; */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	632
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	633 margin-left: -55px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	634 margin-right: 20px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	635 float: left;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	636
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	637 z-index: 2;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	638 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	639
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	640 #change-assembly {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	641 white-space: nowrap;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	642 width: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	643 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	644
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	645 /*************/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	646 /* Plot tips */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	647 #plot_tip {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	648 position: absolute;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	649 opacity: 1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	650 padding: 2px 5px 2px 5px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	651
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	652 z-index: 1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	653 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	654
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	655 #plot_tip_vertical_rule, #plot_tip_horizontal_rule {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	656 position: absolute;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	657 border: 1px solid #BBB;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	658 z-index: -2;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	659 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	660
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	661 #plot_tip_vertical_rule {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	662 border-left: 1px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	663 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	664
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	665 #plot_tip_horizontal_rule {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	666 border-top: 1px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	667 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	668
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	669 .white_stroked {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	670 color: black;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	671 background-color: white;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	672 text-shadow:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	673 -3px -3px 0 white,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	674 3px -3px 0 white,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	675 -3px 3px 0 white,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	676 3px 3px 0 white;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	677 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	678
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	679 img.icon_plot {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	680 width: 14px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	681 height: 12px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	682 display: inline-block;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	683 content: '';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	684 background: 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eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	685 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	686
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	687 #sortRefsBtn label {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	688 display: block;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	689 margin-left: 20px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	690 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	691 #sortRefsBtn input {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	692 float: left;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	693 margin-left: -20px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	694 margin-right: 7px;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	695 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	696
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	697 #mincontig {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	698 margin-bottom: 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	699 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	700 </style>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	701
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	702
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	703 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	704 /! jQuery v1.8.2 jquery.com \| jquery.org/license /
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eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	706 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	707
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	708 <script type="text/javascript">
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eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	714 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	715
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	716 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	717 /*
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	718 * jQuery.flot.dashes
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	719 *
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	720 * options = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	721 * series: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	722 * dashes: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	723 *
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	724 * // show
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	725 * // default: false
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	726 * // Whether to show dashes for the series.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	727 * show: <boolean>,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	728 *
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	729 * // lineWidth
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	730 * // default: 2
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	731 * // The width of the dashed line in pixels.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	732 * lineWidth: <number>,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	733 *
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	734 * // dashLength
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	735 * // default: 10
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	736 * // Controls the length of the individual dashes and the amount of
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	737 * // space between them.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	738 * // If this is a number, the dashes and spaces will have that length.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	739 * // If this is an array, it is read as [ dashLength, spaceLength ]
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	740 * dashLength: <number> or <array[2]>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	741 * }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	742 * }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	743 * }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	744 */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	745 (function($){
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	746
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	747 function init(plot) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	748
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	749 plot.hooks.processDatapoints.push(function(plot, series, datapoints) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	750
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	751 if (!series.dashes.show) return;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	752
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	753 plot.hooks.draw.push(function(plot, ctx) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	754
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	755 var plotOffset = plot.getPlotOffset(),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	756 axisx = series.xaxis,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	757 axisy = series.yaxis;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	758
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	759 function plotDashes(xoffset, yoffset) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	760
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	761 var points = datapoints.points,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	762 ps = datapoints.pointsize,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	763 prevx = null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	764 prevy = null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	765 dashRemainder = 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	766 dashOn = true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	767 dashOnLength,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	768 dashOffLength;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	769
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	770 if (series.dashes.dashLength[0]) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	771 dashOnLength = series.dashes.dashLength[0];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	772 if (series.dashes.dashLength[1]) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	773 dashOffLength = series.dashes.dashLength[1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	774 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	775 dashOffLength = dashOnLength;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	776 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	777 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	778 dashOffLength = dashOnLength = series.dashes.dashLength;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	779 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	780
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	781 ctx.beginPath();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	782
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	783 for (var i = ps; i < points.length; i += ps) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	784
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	785 var x1 = points[i - ps],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	786 y1 = points[i - ps + 1],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	787 x2 = points[i],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	788 y2 = points[i + 1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	789
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	790 if (x1 == null \|\| x2 == null) continue;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	791
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	792 // clip with ymin
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	793 if (y1 <= y2 && y1 < axisy.min) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	794 if (y2 < axisy.min) continue; // line segment is outside
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	795 // compute new intersection point
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	796 x1 = (axisy.min - y1) / (y2 - y1) * (x2 - x1) + x1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	797 y1 = axisy.min;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	798 } else if (y2 <= y1 && y2 < axisy.min) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	799 if (y1 < axisy.min) continue;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	800 x2 = (axisy.min - y1) / (y2 - y1) * (x2 - x1) + x1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	801 y2 = axisy.min;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	802 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	803
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	804 // clip with ymax
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	805 if (y1 >= y2 && y1 > axisy.max) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	806 if (y2 > axisy.max) continue;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	807 x1 = (axisy.max - y1) / (y2 - y1) * (x2 - x1) + x1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	808 y1 = axisy.max;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	809 } else if (y2 >= y1 && y2 > axisy.max) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	810 if (y1 > axisy.max) continue;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	811 x2 = (axisy.max - y1) / (y2 - y1) * (x2 - x1) + x1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	812 y2 = axisy.max;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	813 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	814
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	815 // clip with xmin
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	816 if (x1 <= x2 && x1 < axisx.min) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	817 if (x2 < axisx.min) continue;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	818 y1 = (axisx.min - x1) / (x2 - x1) * (y2 - y1) + y1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	819 x1 = axisx.min;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	820 } else if (x2 <= x1 && x2 < axisx.min) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	821 if (x1 < axisx.min) continue;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	822 y2 = (axisx.min - x1) / (x2 - x1) * (y2 - y1) + y1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	823 x2 = axisx.min;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	824 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	825
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	826 // clip with xmax
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	827 if (x1 >= x2 && x1 > axisx.max) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	828 if (x2 > axisx.max) continue;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	829 y1 = (axisx.max - x1) / (x2 - x1) * (y2 - y1) + y1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	830 x1 = axisx.max;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	831 } else if (x2 >= x1 && x2 > axisx.max) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	832 if (x1 > axisx.max) continue;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	833 y2 = (axisx.max - x1) / (x2 - x1) * (y2 - y1) + y1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	834 x2 = axisx.max;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	835 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	836
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	837 if (x1 != prevx \|\| y1 != prevy) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	838 ctx.moveTo(axisx.p2c(x1) + xoffset, axisy.p2c(y1) + yoffset);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	839 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	840
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	841 var ax1 = axisx.p2c(x1) + xoffset,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	842 ay1 = axisy.p2c(y1) + yoffset,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	843 ax2 = axisx.p2c(x2) + xoffset,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	844 ay2 = axisy.p2c(y2) + yoffset,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	845 dashOffset;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	846
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	847 function lineSegmentOffset(segmentLength) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	848
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	849 var c = Math.sqrt(Math.pow(ax2 - ax1, 2) + Math.pow(ay2 - ay1, 2));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	850
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	851 if (c <= segmentLength) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	852 return {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	853 deltaX: ax2 - ax1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	854 deltaY: ay2 - ay1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	855 distance: c,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	856 remainder: segmentLength - c
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	857 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	858 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	859 var xsign = ax2 > ax1 ? 1 : -1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	860 ysign = ay2 > ay1 ? 1 : -1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	861 return {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	862 deltaX: xsign * Math.sqrt(Math.pow(segmentLength, 2) / (1 + Math.pow((ay2 - ay1)/(ax2 - ax1), 2))),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	863 deltaY: ysign * Math.sqrt(Math.pow(segmentLength, 2) - Math.pow(segmentLength, 2) / (1 + Math.pow((ay2 - ay1)/(ax2 - ax1), 2))),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	864 distance: segmentLength,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	865 remainder: 0
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	866 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	867 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	868 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	869 //-end lineSegmentOffset
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	870
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	871 do {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	872
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	873 dashOffset = lineSegmentOffset(
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	874 dashRemainder > 0 ? dashRemainder :
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	875 dashOn ? dashOnLength : dashOffLength);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	876
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	877 if (dashOffset.deltaX != 0 \|\| dashOffset.deltaY != 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	878 if (dashOn) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	879 ctx.lineTo(ax1 + dashOffset.deltaX, ay1 + dashOffset.deltaY);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	880 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	881 ctx.moveTo(ax1 + dashOffset.deltaX, ay1 + dashOffset.deltaY);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	882 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	883 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	884
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	885 dashOn = !dashOn;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	886 dashRemainder = dashOffset.remainder;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	887 ax1 += dashOffset.deltaX;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	888 ay1 += dashOffset.deltaY;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	889
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	890 } while (dashOffset.distance > 0);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	891
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	892 prevx = x2;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	893 prevy = y2;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	894 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	895
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	896 ctx.stroke();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	897 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	898 //-end plotDashes
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	899
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	900 ctx.save();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	901 ctx.translate(plotOffset.left, plotOffset.top);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	902 ctx.lineJoin = 'round';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	903
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	904 var lw = series.dashes.lineWidth,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	905 sw = series.shadowSize;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	906
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	907 // FIXME: consider another form of shadow when filling is turned on
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	908 if (lw > 0 && sw > 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	909 // draw shadow as a thick and thin line with transparency
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	910 ctx.lineWidth = sw;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	911 ctx.strokeStyle = "rgba(0,0,0,0.1)";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	912 // position shadow at angle from the mid of line
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	913 var angle = Math.PI/18;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	914 plotDashes(Math.sin(angle) * (lw/2 + sw/2), Math.cos(angle) * (lw/2 + sw/2));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	915 ctx.lineWidth = sw/2;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	916 plotDashes(Math.sin(angle) * (lw/2 + sw/4), Math.cos(angle) * (lw/2 + sw/4));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	917 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	918
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	919 ctx.lineWidth = lw;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	920 ctx.strokeStyle = series.color;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	921
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	922 if (lw > 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	923 plotDashes(0, 0);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	924 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	925
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	926 ctx.restore();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	927
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	928 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	929 //-end draw hook
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	930
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	931 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	932 //-end processDatapoints hook
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	933
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	934 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	935 //-end init
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	936
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	937 $.plot.plugins.push({
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	938 init: init,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	939 options: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	940 series: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	941 dashes: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	942 show: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	943 lineWidth: 2,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	944 dashLength: 10
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	945 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	946 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	947 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	948 name: 'dashes',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	949 version: '0.1'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	950 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	951
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	952 })(jQuery)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	953
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	954
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	955 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	956
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	957 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	958
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	959 var cumulative = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	960 isInitialized: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	961
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	962 maxX: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	963 maxY: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	964 maxYTick: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	965 series: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	966 showWithData: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	967 colors: [],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	968
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	969 draw: function(name, title, colors, filenames, listsOfLengths, refLengths, tickX,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	970 placeholder, legendPlaceholder, glossary, order, scalePlaceholder) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	971
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	972 $(scalePlaceholder).empty();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	973
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	974 if (!this.isInitialized) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	975 // div.html(
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	976 // "<span class='plot-header'>" + addTooltipIfDefinitionExists(glossary, title) + "</span>" +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	977 // "<div class='plot-placeholder' id='cumulative-plot-placeholder'></div>"
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	978 // );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	979 cumulative.series = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	980 var plotsN = filenames.length;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	981 var refLength = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	982 if (refLengths) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	983 for (var i = 0, size = refLengths.length; i < size; i++)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	984 refLength += refLengths[i];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	985 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	986 if (refLength) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	987 cumulative.maxY = refLength;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	988 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	989
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	990 cumulative.colors = colors;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	991
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	992 function addCumulativeLenData(label, index, color, lengths, isRef) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	993 if (!(lengths instanceof Array))
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	994 lengths = [lengths];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	995 var size = lengths.length;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	996 var points = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	997 data: new Array(size + 1),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	998 label: label,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	999 number: index,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1000 color: color
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1001 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1002
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1003 points.data[0] = [0, 0];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1004
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1005 var y = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1006 for (var j = 0; j < size; j++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1007 y += lengths[j];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1008 points.data[j+1] = [j+1, y];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1009 if (y > cumulative.maxY) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1010 cumulative.maxY = y;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1011 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1012 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1013
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1014 if (size > cumulative.maxX) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1015 cumulative.maxX = size;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1016 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1017 if (isRef){
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1018 points.isReference = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1019 points.dashes = {show: true, lineWidth: 1};
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1020 if (size < cumulative.maxX) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1021 points.data[size + 1] = [cumulative.maxX, y];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1022 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1023 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1024 return points;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1025 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1026
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1027 for (var i = 0; i < plotsN; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1028 var lengths = listsOfLengths[order[i]];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1029 var asm_name = filenames[order[i]];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1030 var color = colors[order[i]];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1031 cumulative.series[i] = addCumulativeLenData(asm_name, i, color, lengths);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1032 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1033
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1034 // var lineColors = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1035 //
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1036 // for (i = 0; i < colors.length; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1037 // lineColors.push(changeColor(colors[i], 0.9, false));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1038 // }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1039
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1040 for (i = 0; i < plotsN; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1041 if (typeof broken_scaffolds_labels !== undefined && $.inArray(filenames[order[i]], broken_scaffolds_labels) != -1) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1042 cumulative.series[i].dashes = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1043 show: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1044 lineWidth: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1045 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1046 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1047 else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1048 cumulative.series[i].lines = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1049 show: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1050 lineWidth: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1051 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1052 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1053 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1054
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1055 for (i = 0; i < plotsN; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1056 cumulative.colors.push(cumulative.series[i].color);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1057 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1058
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1059 //cumulative.maxYTick = getMaxDecimalTick(cumulative.maxY);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1060
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1061 if (refLengths) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1062 size = refLengths.length;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1063 var ref_label = 'reference, ' + toPrettyString(refLength, 'bp');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1064 cumulative.series.push(addCumulativeLenData(ref_label, i, '#000000', refLengths, true));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1065 cumulative.colors.push('#000000');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1066 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1067
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1068
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1069 // if (referenceLength) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1070 // yaxes.push({
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1071 // ticks: [referenceLength],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1072 // min: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1073 // max: maxYTick,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1074 // position: 'right',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1075 //// labelWidth: 50,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1076 // reserveSpace: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1077 // tickFormatter: function (val, axis) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1078 // return '<div style="">' + toPrettyStringWithDimension(referenceLength, 'bp') +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1079 // ' <span style="margin-left: -0.2em;">(reference)</span></div>';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1080 // },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1081 // minTickSize: 1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1082 // });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1083 // }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1084 var yaxis = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1085 min: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1086 //max: cumulative.maxYTick,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1087 labelWidth: 120,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1088 reserveSpace: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1089 lineWidth: 0.5,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1090 color: '#000000',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1091 tickFormatter: getBpTickFormatter(cumulative.maxY),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1092 minTickSize: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1093 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1094 var yaxes = [yaxis];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1095
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1096 cumulative.showWithData = function(series, colors) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1097 var plot = $.plot(placeholder, series, {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1098 shadowSize: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1099 colors: cumulative.colors,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1100 legend: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1101 container: $('useless-invisible-element-that-does-not-even-exist'),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1102 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1103 // legend: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1104 // container: legendPlaceholder,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1105 // position: 'se',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1106 // labelBoxBorderColor: '#FFF',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1107 // labelFormatter: labelFormatter,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1108 // },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1109 grid: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1110 borderWidth: 1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1111 hoverable: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1112 autoHighlight: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1113 mouseActiveRadius: 1000
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1114 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1115 yaxes: yaxes,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1116 xaxis: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1117 min: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1118 max: cumulative.maxX,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1119 lineWidth: 0.5,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1120 color: '#000',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1121 tickFormatter: getContigNumberTickFormatter(cumulative.maxX, tickX),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1122 minTickSize: tickX
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1123 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1124 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1125
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1126 bindTip(placeholder, series, plot, ordinalNumberToPrettyString, tickX, 'contig', 'bottom right');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1127 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1128
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1129 cumulative.isInitialized = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1130 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1131
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1132 addLegendClickEvents(cumulative, filenames.length, showPlotWithInfo, refLengths);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1133
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1134 showPlotWithInfo(cumulative);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1135
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1136 $('#contigs_are_ordered').show();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1137 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1138 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1139
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1140 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1141
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1142 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1143
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1144 var nx = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1145 nx: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1146 isInitialized: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1147 maxY: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1148 maxYTick: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1149 series: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1150 showWithData: null
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1151 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1152
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1153 nax: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1154 isInitialized: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1155 maxY: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1156 maxYTick: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1157 series: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1158 showWithData: null
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1159 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1160
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1161 ngx: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1162 isInitialized: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1163 maxY: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1164 maxYTick: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1165 series: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1166 showWithData: null
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1167 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1168
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1169 ngax: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1170 isInitialized: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1171 maxY: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1172 maxYTick: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1173 series: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1174 showWithData: null
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1175 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1176
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1177 draw: function (name, title, colors, filenames, data, refPlotValue, tickX,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1178 placeholder, legendPlaceholder, glossary, order, scalePlaceholder) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1179
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1180 $(scalePlaceholder).empty();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1181
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1182 var coordX = data.coord_x;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1183 var coordY = data.coord_y;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1184
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1185 var cur_filenames = data.filenames;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1186 var info = nx[name];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1187
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1188 if (!info.isInitialized) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1189 var plotsN = cur_filenames.length;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1190 info.series = new Array(plotsN);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1191
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1192 for (var i = 0; i < plotsN; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1193 var index = $.inArray(cur_filenames[order[i]], filenames);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1194 var plot_coordX = coordX[order[i]];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1195 var plot_coordY = coordY[order[i]];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1196 var size = plot_coordX.length;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1197
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1198 info.series[i] = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1199 data: [],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1200 label: filenames[index],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1201 number: index,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1202 color: colors[index]
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1203 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1204 info.series[i].data.push([0.0, plot_coordY[0]]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1205 var currentLen = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1206 var x = 0.0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1207
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1208 for (var k = 0; k < size; k++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1209 info.series[i].data.push([plot_coordX[k], plot_coordY[k]]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1210 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1211
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1212 if (info.series[i].data[0][1] > info.maxY) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1213 info.maxY = info.series[i].data[0][1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1214 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1215
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1216 var lastPt = info.series[i].data[info.series[i].data.length-1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1217 info.series[i].data.push([lastPt[0], 0]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1218 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1219
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1220 for (i = 0; i < plotsN; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1221 if (typeof broken_scaffolds_labels !== undefined && $.inArray(filenames[order[i]], broken_scaffolds_labels) != -1) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1222 info.series[i].dashes = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1223 show: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1224 lineWidth: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1225 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1226 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1227 else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1228 info.series[i].lines = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1229 show: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1230 lineWidth: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1231 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1232 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1233 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1234
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1235 // for (i = 0; i < plotsN; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1236 // plotsData[i].points = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1237 // show: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1238 // radius: 1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1239 // fill: 1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1240 // fillColor: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1241 // }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1242 // }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1243
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1244 info.showWithData = function(series, colors) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1245 var plot = $.plot(placeholder, series, {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1246 shadowSize: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1247 colors: colors,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1248 legend: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1249 container: $('useless-invisible-element-that-does-not-even-exist'),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1250 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1251 grid: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1252 borderWidth: 1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1253 hoverable: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1254 autoHighlight: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1255 mouseActiveRadius: 1000
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1256 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1257 yaxis: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1258 min: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1259 // max: info.maxY,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1260 labelWidth: 120,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1261 reserveSpace: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1262 lineWidth: 0.5,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1263 color: '#000',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1264 tickFormatter: getBpTickFormatter(info.maxY),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1265 minTickSize: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1266 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1267 xaxis: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1268 min: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1269 max: 100,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1270 lineWidth: 0.5,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1271 color: '#000',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1272 tickFormatter: function (val, axis) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1273 if (val == 100) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1274 return ' x<span class="rhs"> </span>=<span class="rhs"> </span>100%'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1275 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1276 return val;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1277 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1278 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1279 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1280 minTickSize: tickX
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1281 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1282 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1283
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1284 var firstLabel = $('.yAxis .tickLabel').last();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1285 firstLabel.prepend(title + '<span class="rhs"> </span>=<span class="rhs"> </span>');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1286
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1287 bindTip(placeholder, series, plot, toPrettyString, 1, '%', 'top right');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1288
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1289 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1290
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1291 info.isInitialized = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1292 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1293
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1294 addLegendClickEvents(info, filenames.length, showPlotWithInfo);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1295 showPlotWithInfo(info);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1296 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1297 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1298
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1299
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1300
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1301 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1302
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1303 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1304
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1305 var normal_scale_span =
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1306 "<span class='selected-switch'>" +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1307 'Normal' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1308 "</span>";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1309 var normal_scale_a =
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1310 "<a class='dotted-link' onClick='setNormalScale()'>" +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1311 'Normal' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1312 "</a>";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1313 var log_scale_span =
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1314 "<span class='selected-switch'>" +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1315 'logarithmic' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1316 "</span>";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1317 var log_scale_a =
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1318 "<a class='dotted-link' onClick='setLogScale()'>" +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1319 'logarithmic' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1320 "</a>";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1321
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1322 var show_all_span =
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1323 "<span class='selected-switch gc'>" +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1324 'Back to overview' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1325 "</span>";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1326 var show_all_a =
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1327 "   <a class='dotted-link' onClick='showAll()'>" +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1328 'Back to overview' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1329 "</a>";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1330
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1331 var gc = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1332 isInitialized: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1333
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1334 maxY: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1335 plot: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1336 series: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1337 showWithData: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1338 minPow: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1339 ticks: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1340 placeholder: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1341 legendPlaceholder: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1342 colors: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1343 yAxisLabeled: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1344
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1345 show_all_el: show_all_span,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1346 reference: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1347
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1348 normal_scale_el: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1349 log_scale_el: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1350
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1351 draw: function(name, title, colors, filenames, gcInfos, reflen, tickX,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1352 placeholder, legendPlaceholder, glossary, order, scalePlaceholder) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1353 gc.normal_scale_el = normal_scale_span;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1354 gc.log_scale_el = log_scale_a;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1355 $(scalePlaceholder).html(
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1356 "<div id='change-scale' style='margin-right: 3px; visibility: hidden;'>" +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1357 "<span id='normal_scale_label'>" +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1358 gc.normal_scale_el +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1359 "</span> / " +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1360 "<span id='log_scale_label'>" +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1361 gc.log_scale_el +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1362 "</span> scale" +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1363 "</div>"
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1364 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1365
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1366 var refIndex = gcInfos.reference_index;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1367 if (!gc.isInitialized) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1368 gc.legendPlaceholder = legendPlaceholder;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1369 gc.placeholder = placeholder;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1370 gc.colors = colors;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1371 gc.filenames = filenames;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1372
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1373 var bin_size = 1.0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1374 var plotsN = filenames.length;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1375 gc.series = new Array(plotsN + 1);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1376 gc.series[0] = new Array(plotsN);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1377
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1378 gc.maxY = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1379 var minY = Number.MAX_VALUE;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1380
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1381 function updateMinY(y) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1382 if (y < minY && y != 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1383 minY = y;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1384 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1385 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1386 function updateMaxY(y) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1387 if (y > gc.maxY) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1388 gc.maxY = y;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1389 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1390 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1391
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1392 for (var i = 0; i < plotsN; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1393 gc.series[0][i] = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1394 data: [],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1395 label: filenames[order[i]],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1396 number: order[i],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1397 color: colors[order[i]]
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1398 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1399 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1400
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1401 function makeSeriesFromDistributions(distributionsXandY, series_i, plot_i) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1402 var distributionsX = distributionsXandY[0];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1403 var distributionsY = distributionsXandY[1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1404
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1405 for (var j = 0; j < distributionsX.length; j++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1406 var x = distributionsX[j];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1407 var y = distributionsY[j];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1408 gc.series[series_i][plot_i].data.push([x, y]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1409 updateMinY(y);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1410 updateMaxY(y);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1411 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1412 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1413
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1414 function makeSeries(listsOfGCInfo, listOfGcDistributions, seriesIdx) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1415 for (var i = 0; i < plotsN; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1416 if (listsOfGCInfo) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1417 makeSeriesFromInfo(listsOfGCInfo[order[i]], seriesIdx, i);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1418 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1419 makeSeriesFromDistributions(listOfGcDistributions[order[i]], seriesIdx, i);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1420 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1421 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1422 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1423
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1424 var listsOfGCInfo = gcInfos.lists_of_gc_info;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1425 var listOfGcDistributions = gcInfos.list_of_GC_distributions;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1426 makeSeries(listsOfGCInfo, listOfGcDistributions, 0);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1427
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1428 function makeSeriesFromInfo(GC_info, series_i, i) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1429 var cur_bin = 0.0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1430
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1431 var x = cur_bin;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1432 var y = filterAndSumGcInfo(GC_info, function(GC_percent) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1433 return GC_percent == cur_bin;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1434 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1435 gc.series[series_i][i].data.push([x, y]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1436
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1437 updateMinY(y);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1438 updateMaxY(y);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1439
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1440 while (cur_bin < 100.0 - bin_size) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1441 cur_bin += bin_size;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1442
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1443 x = cur_bin;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1444 y = filterAndSumGcInfo(GC_info, function(GC_percent) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1445 return GC_percent > (cur_bin - bin_size) && GC_percent <= cur_bin;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1446 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1447 gc.series[series_i][i].data.push([x, y]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1448
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1449 updateMinY(y);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1450 updateMaxY(y);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1451 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1452
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1453 x = 100.0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1454 y = filterAndSumGcInfo(GC_info, function(GC_percent) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1455 return GC_percent > cur_bin && GC_percent <= 100.0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1456 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1457
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1458 gc.series[series_i][i].data.push([x, y]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1459
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1460 updateMinY(y);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1461 updateMaxY(y);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1462 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1463
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1464 for (i = 0; i < plotsN; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1465 if (typeof broken_scaffolds_labels !== undefined && $.inArray(filenames[order[i]], broken_scaffolds_labels) != -1) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1466 gc.series[0][i].dashes = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1467 show: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1468 lineWidth: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1469 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1470 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1471 else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1472 gc.series[0][i].lines = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1473 show: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1474 lineWidth: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1475 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1476 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1477 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1478
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1479 if (refIndex) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1480 gc.reference = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1481 gc.series[0].push({
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1482 data: [],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1483 label: 'reference',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1484 isReference: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1485 number: filenames.length,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1486 lines: {},
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1487 dashes: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1488 show: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1489 lineWidth: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1490 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1491 color: '#000000'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1492 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1493 if (listsOfGCInfo) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1494 makeSeriesFromInfo(listsOfGCInfo[refIndex], 0, refIndex);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1495 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1496 makeSeriesFromDistributions(listOfGcDistributions[refIndex], 0, refIndex);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1497 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1498 gc.colors.push('#000000')
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1499 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1500
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1501 if (gcInfos.list_of_GC_contigs_distributions) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1502 listOfGcDistributions = gcInfos.list_of_GC_contigs_distributions;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1503 var maxY = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1504 for (var file_n = 0; file_n < filenames.length; file_n++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1505 gc.series[file_n + 1] = new Array(1);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1506 gc.series[file_n + 1][0] = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1507 data: [],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1508 label: filenames[order[file_n]],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1509 number: order[file_n],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1510 color: colors[order[file_n]],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1511 bars: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1512 show: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1513 lineWidth: 0.6,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1514 fill: 0.6,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1515 barWidth: 5
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1516 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1517 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1518
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1519 var distributionsX = listOfGcDistributions[file_n][0];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1520 var distributionsY = listOfGcDistributions[file_n][1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1521
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1522 for (var j = 0; j < distributionsX.length; j++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1523 var x = distributionsX[j];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1524 var y = distributionsY[j];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1525 gc.series[file_n + 1][0].data.push([x, y]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1526 maxY = Math.max(maxY, y);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1527 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1528 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1529 for (var file_n = 0; file_n < filenames.length; file_n++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1530 gc.series[file_n + 1][0].maxY = maxY;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1531 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1532 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1533 // Calculate the minimum possible non-zero Y to clip useless bottoms
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1534 // of logarithmic plots.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1535 var maxYTick = getMaxDecimalTick(gc.maxY);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1536 gc.minPow = Math.round(Math.log(minY) / Math.log(10));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1537 gc.ticks = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1538 for (var pow = gc.minPow; Math.pow(10, pow) < maxYTick; pow++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1539 gc.ticks.push(Math.pow(10, pow));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1540 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1541 gc.ticks.push(Math.pow(10, pow));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1542
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1543 gc.isInitialized = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1544 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1545
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1546 gc.showWithData = showInNormalScaleWithData;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1547 if (gcInfos.list_of_GC_contigs_distributions) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1548 createLegend(gc.filenames, gc.colors, 0, gc.reference);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1549 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1550 addLegendClickEvents(gc, filenames.length, showPlotWithInfo, false, 0);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1551
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1552 showPlotWithInfo(gc, 0);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1553
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1554 $('#change-scale').css('visibility', 'visible');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1555 $('#gc_info').show();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1556 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1557 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1558
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1559 function showAll() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1560 $('#change-scale').show();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1561 $('#gc_info').show();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1562 $('#gc_contigs_info').hide();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1563 createLegend(gc.filenames, gc.colors, 0, gc.reference);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1564
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1565 gc.show_all_el = show_all_span;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1566 gc.showWithData = gc.log_scale_el == log_scale_a ? showInNormalScaleWithData : showInLogarithmicScaleWithData;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1567
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1568 $('#show_all_label').html(gc.show_all_el);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1569 showPlotWithInfo(gc, 0);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1570 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1571
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1572 function showPlot(index) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1573 $('#change-scale').hide();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1574 $('#gc_info').hide();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1575 $('#gc_contigs_info').show();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1576 createLegend([gc.filenames[index - 1]], [gc.colors[index - 1]], index);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1577
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1578 gc.show_all_el = show_all_a;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1579 gc.showWithData = showOneAssembly;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1580
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1581 $('#show_all_label').html(gc.show_all_el);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1582 showPlotWithInfo(gc, index);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1583 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1584
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1585 function showOneAssembly(series, colors) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1586 if (series == null) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1587 return;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1588 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1589
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1590 gc.plot = $.plot(gc.placeholder, series, {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1591 shadowSize: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1592 colors: colors,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1593 legend: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1594 container: $('useless-invisible-element-that-does-not-even-exist')
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1595 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1596 grid: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1597 hoverable: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1598 borderWidth: 1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1599 autoHighlight: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1600 mouseActiveRadius: 1000
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1601 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1602 yaxis: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1603 min: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1604 max: series[0].maxY * 1.1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1605 labelWidth: 120,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1606 reserveSpace: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1607 lineWidth: 0.5,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1608 color: '#000',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1609 tickFormatter: getJustNumberTickFormatter(gc.maxY),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1610 minTickSize: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1611 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1612 xaxis: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1613 min: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1614 max: 100,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1615 lineWidth: 0.5,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1616 color: '#000',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1617 tickFormatter: function (val, axis) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1618 if (val == 100) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1619 return ' 100% GC'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1620 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1621 return val;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1622 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1623 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1624 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1625 minTickSize: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1626 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1627 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1628
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1629 var firstLabel = $('.yAxis .tickLabel').last();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1630 firstLabel.append(' contigs');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1631 unBindTips(gc.placeholder);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1632 bindTip(gc.placeholder, series, gc.plot, getIntervalToPrettyString(5), 1, '%<span class="rhs"> </span>GC', 'top right');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1633 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1634
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1635 function showInNormalScaleWithData(series, colors) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1636 if (series == null \|\| gc.maxY == null)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1637 return;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1638
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1639 gc.yAxisLabeled = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1640
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1641 gc.plot = $.plot(gc.placeholder, series, {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1642 shadowSize: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1643 colors: colors,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1644 legend: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1645 container: $('useless-invisible-element-that-does-not-even-exist'),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1646 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1647 grid: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1648 borderWidth: 1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1649 hoverable: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1650 autoHighlight: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1651 mouseActiveRadius: 1000,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1652 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1653 yaxis: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1654 min: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1655 // max: gc.maxY + 0.1 * gc.maxY,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1656 labelWidth: 120,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1657 reserveSpace: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1658 lineWidth: 0.5,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1659 color: '#000',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1660 tickFormatter: windowsTickFormatter,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1661 minTickSize: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1662 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1663 xaxis: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1664 min: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1665 max: 100,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1666 lineWidth: 0.5,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1667 color: '#000',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1668 tickFormatter: function (val, axis) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1669 if (val == 100) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1670 return ' 100% GC'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1671 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1672 return val;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1673 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1674 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1675 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1676 minTickSize: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1677 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1678 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1679
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1680 var firstLabel = $('.yAxis .tickLabel').last();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1681 firstLabel.append(' windows');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1682 bindTip(gc.placeholder, series, gc.plot, toPrettyString, 1, '%<span class="rhs"> </span>GC', 'top right');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1683 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1684
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1685
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1686 function showInLogarithmicScaleWithData(series, colors) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1687 if (series == null \|\| gc.maxY == null \|\| gc.minPow == null) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1688 return;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1689 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1690
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1691 gc.yAxisLabeled = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1692
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1693 gc.plot = $.plot(gc.placeholder, series, {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1694 shadowSize: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1695 colors: colors,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1696 legend: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1697 container: $('useless-invisible-element-that-does-not-even-exist'),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1698 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1699 grid: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1700 hoverable: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1701 borderWidth: 1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1702 autoHighlight: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1703 mouseActiveRadius: 1000
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1704 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1705 yaxis: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1706 min: Math.pow(10, gc.minPow),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1707 // max: gc.maxY,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1708 labelWidth: 120,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1709 reserveSpace: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1710 lineWidth: 0.5,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1711 color: '#000',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1712 tickFormatter: windowsTickFormatter,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1713 minTickSize: 1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1714 ticks: gc.ticks,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1715
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1716 transform: function(v) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1717 return Math.log(v + 0.0001)/move away from zero/ / Math.log(10);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1718 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1719 inverseTransform: function(v) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1720 return Math.pow(v, 10);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1721 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1722 tickDecimals: 3
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1723 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1724 xaxis: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1725 min: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1726 max: 100,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1727 lineWidth: 0.5,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1728 color: '#000',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1729 tickFormatter: function (val, axis) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1730 if (val == 100) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1731 return ' 100%<span class="rhs"> </span>GC'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1732 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1733 return val;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1734 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1735 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1736 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1737 minTickSize: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1738 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1739 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1740
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1741 var firstLabel = $('.yAxis .tickLabel').last();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1742 firstLabel.append(' windows');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1743 bindTip(gc.placeholder, series, gc.plot, toPrettyString, 1, '% GC', 'top right');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1744 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1745
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1746
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1747 function setLogScale() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1748 gc.normal_scale_el = normal_scale_a;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1749 gc.log_scale_el = log_scale_span;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1750 gc.showWithData = showInLogarithmicScaleWithData;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1751
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1752 $('#normal_scale_label').html(gc.normal_scale_el);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1753 $('#log_scale_label').html(gc.log_scale_el);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1754 showPlotWithInfo(gc, 0);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1755 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1756
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1757
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1758 function setNormalScale() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1759 gc.normal_scale_el = normal_scale_span;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1760 gc.log_scale_el = log_scale_a;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1761 gc.showWithData = showInNormalScaleWithData;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1762
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1763 $('#normal_scale_label').html(gc.normal_scale_el);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1764 $('#log_scale_label').html(gc.log_scale_el);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1765 showPlotWithInfo(gc, 0);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1766 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1767
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1768
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1769
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1770 function filterAndSumGcInfo(GC_info, condition) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1771 var contigs_lengths_cur_bin = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1772 for (var j = 0; j < GC_info.length; j++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1773 var GC = GC_info[j];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1774 var contig_length = GC[0];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1775 var GC_percent = GC[1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1776
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1777 if (condition(GC_percent) == true) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1778 contigs_lengths_cur_bin.push(contig_length);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1779 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1780 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1781 var val_bp = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1782 for (var j = 0; j < contigs_lengths_cur_bin.length; j++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1783 val_bp += contigs_lengths_cur_bin[j];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1784 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1785 return val_bp;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1786 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1787
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1788 function createLegend(labels, colors, index, reference) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1789 var selectedAssemblies = getSelectedAssemblies(labels);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1790 $('#legend-placeholder').empty();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1791 var selectors = "";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1792
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1793 labels.forEach(function(label, i) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1794 var link = index ? '' : '<span id="' + labels[i] + '-switch"' + "class='plot-gc-type-switch dotted-link'>by contigs<br></span><br>";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1795 var assemblyIdx = gc.filenames.indexOf(label);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1796 addLabelToLegend(assemblyIdx, label, selectedAssemblies, colors, link);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1797 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1798 if (reference) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1799 isChecked = (selectedAssemblies.length > 0 && selectedAssemblies.indexOf(gc.filenames.length.toString())) != -1 ? 'checked="checked"' : "";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1800 $('#legend-placeholder').append(
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1801 '<div id="reference-label">' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1802 '<label for="reference" style="color: #000000;">' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1803 '<input type="checkbox" name="' + gc.filenames.length +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1804 '" checked="' + isChecked + '" id="reference"> ' + 'reference' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1805 '</label>' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1806 '</div>'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1807 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1808 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1809 if (index > 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1810 for (var filenames_n = 0; filenames_n < gc.filenames.length; filenames_n++){
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1811 selectors += '<br><span id="' + gc.filenames[filenames_n] + '-switch" ' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1812 "class='plot-switch dotted-link'>" +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1813 gc.filenames[filenames_n] + "</span>";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1814 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1815 $('#legend-placeholder').append(
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1816 "<br><br><div id='change-assembly' style='margin-right: 3px;'>" +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1817 "<span id='show_all_label'>" +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1818 gc.show_all_el +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1819 "</span><br>" + selectors +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1820 "</div>"
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1821 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1822 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1823 addLinksToSwitches(index - 1);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1824 addLegendClickEvents(gc, gc.series.length, showPlotWithInfo, false, index);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1825 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1826
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1827 function addLinksToSwitches(index) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1828 var filenames = gc.filenames;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1829 for (filenames_n = 0; filenames_n < filenames.length; filenames_n++){
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1830 var switchSpan = document.getElementById(filenames[filenames_n] + "-switch");
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1831 $(switchSpan).click(getToggleSwitchFunction(filenames_n + 1));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1832 if (filenames_n == index) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1833 switchSpan.className = 'plot-switch selected-switch gc';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1834 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1835 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1836 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1837
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1838 function getToggleSwitchFunction(index) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1839 return function() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1840 if (index > 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1841 showPlot(index);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1842 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1843 else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1844 showAll();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1845 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1846 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1847 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1848 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1849
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1850 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1851
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1852 var frc = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1853 genes: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1854 isInitialized: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1855
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1856 maxY: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1857 maxYTick: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1858 series: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1859 showWithData: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1860
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1861 yAxisLabeled: false
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1862 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1863
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1864 operons: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1865 isInitialized: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1866
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1867 maxY: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1868 maxYTick: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1869 series: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1870 showWithData: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1871
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1872 yAxisLabeled: false
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1873 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1874
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1875 misassemblies: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1876 isInitialized: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1877
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1878 maxY: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1879 maxYTick: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1880 series: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1881 showWithData: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1882
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1883 yAxisLabeled: false
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1884 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1885
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1886 draw: function (name, title, colors, filenames, data, refGenesNumber, tickX,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1887 placeholder, legendPlaceholder, glossary, order, scalePlaceholder) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1888 // div.html(
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1889 // "<span class='plot-header'>" + kind[0].toUpperCase() + kind.slice(1) + "s covered</span>" +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1890 // "<div class='plot-placeholder' id='" + kind + "s-plot-placeholder'></div>"
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1891 // );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1892 $(scalePlaceholder).empty();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1893
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1894 var info = frc[name];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1895 var coordX = data.coord_x;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1896 var coordY = data.coord_y;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1897
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1898 info.yAxisLabeled = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1899 var cur_filenames = data.filenames;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1900 if (!info.isInitialized) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1901 var plotsN = cur_filenames.length;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1902 info.series = new Array(plotsN);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1903
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1904 info.maxY = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1905 info.maxX = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1906
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1907 for (var i = 0; i < plotsN; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1908 var index = $.inArray(cur_filenames[order[i]], filenames);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1909 var plot_coordX = coordX[order[i]];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1910 var plot_coordY = coordY[order[i]];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1911 var featureSpace = plot_coordX[plot_coordX.length - 1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1912 var maxY = plot_coordY[plot_coordY.length - 1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1913
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1914 info.series[i] = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1915 data: [],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1916 label: filenames[index],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1917 number: index,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1918 color: colors[index]
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1919 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1920
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1921 info.series[i].data.push([0.0, plot_coordY[0]]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1922
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1923 if (featureSpace > info.maxX) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1924 info.maxX = featureSpace;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1925 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1926 for (var k = 0; k < plot_coordX.length; k++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1927 info.series[i].data.push([plot_coordX[k], plot_coordY[k]]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1928 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1929
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1930 if (maxY > info.maxY) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1931 info.maxY = maxY;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1932 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1933 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1934
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1935 for (i = 0; i < plotsN; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1936 if (typeof broken_scaffolds_labels !== undefined && $.inArray(filenames[order[i]], broken_scaffolds_labels) != -1) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1937 info.series[i].dashes = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1938 show: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1939 lineWidth: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1940 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1941 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1942 else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1943 info.series[i].lines = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1944 show: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1945 lineWidth: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1946 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1947 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1948 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1949
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1950 info.showWithData = function(series, colors) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1951 var plot = $.plot(placeholder, series, {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1952 shadowSize: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1953 colors: colors,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1954 legend: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1955 container: $('useless-invisible-element-that-does-not-even-exist')
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1956 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1957 grid: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1958 borderWidth: 1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1959 hoverable: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1960 autoHighlight: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1961 mouseActiveRadius: 1000,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1962 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1963 yaxis: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1964 min: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1965 max: Math.max(100, info.maxY),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1966 labelWidth: 145,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1967 reserveSpace: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1968 lineWidth: 0.5,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1969 color: '#000',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1970 tickFormatter: getPercentTickFormatter(Math.max(100, info.maxY)),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1971 minTickSize: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1972 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1973 xaxis: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1974 min: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1975 max: info.maxX,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1976 lineWidth: 0.5,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1977 color: '#000',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1978 tickFormatter: getJustNumberTickFormatter(info.maxX, ' ' + name),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1979 minTickSize: tickX
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1980 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1981 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1982
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1983 var firstLabel = $('.yAxis .tickLabel').last();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1984 firstLabel.prepend('Genome coverage<span class="rhs"> </span>=<span class="rhs"> </span>');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1985
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1986 bindTip(placeholder, series, plot, frcNumberToPrettyString, tickX, name, 'bottom right', false, '%');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1987 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1988
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1989 info.isInitialized = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1990 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1991
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1992 addLegendClickEvents(info, filenames.length, showPlotWithInfo, refGenesNumber);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1993 showPlotWithInfo(info);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1994 $('#frc_info').show();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1995 $('.frc_plot_name').html(name);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1996 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1997 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1998
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	1999
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2000
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2001 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2002
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2003 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2004
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2005 /**********/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2006 /* COLORS */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2007
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2008 // var colors = ["#FF5900", "#008FFF", "#168A16", "#7C00FF", "#00B7FF", "#FF0080", "#7AE01B", "#782400", "#E01B6A"];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2009 var standard_colors = [
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2010 '#FF0000', //red
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2011 '#0000FF', //blue
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2012 '#008000', //green
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2013 '#FFA500', //orange
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2014 '#FF00FF', //fushua
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2015 '#CCCC00', //yellow
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2016 '#800000', //maroon
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2017 '#00CCCC', //aqua
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2018 '#808080', //gray
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2019 '#800080', //purple
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2020 '#808000', //olive
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2021 '#000080', //navy
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2022 '#008080', //team
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2023 '#00FF00', //lime
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2024 ];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2025
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2026 function distinctColors(count) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2027 var colors = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2028 for(var hue = 0; hue < 360; hue += 360 / count) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2029 var color = hsvToRgb(hue, 100, 100);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2030 var colorStr = '#' + color[0].toString(16) + color[1].toString(16) + color[2].toString(16);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2031 colors.push();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2032 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2033 return colors;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2034 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2035
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2036 /**************/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2037 /* FORMATTING */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2038 function isIntegral(num) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2039 return num % 1 === 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2040 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2041
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2042 function isFractional(num) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2043 return !isIntegral(num);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2044 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2045
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2046 function getIntervalToPrettyString(interval) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2047 return function(num, unit) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2048 return intervalToPrettyString(interval, num, unit);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2049 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2050 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2051
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2052 function intervalToPrettyString(interval, num, unit) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2053 if (typeof num === 'number') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2054 var str = toPrettyString(num);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2055 str += '-' + toPrettyString(num + interval);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2056 str += (unit ? '<span class="rhs"> </span>' + unit : '');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2057 return str;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2058 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2059 return num;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2060 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2061 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2062
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2063 function toPrettyString(num, unit) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2064 if (typeof num === 'number') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2065 var str;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2066 if (num <= 9999) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2067 if (isFractional(num)) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2068 if (isIntegral(num * 10)) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2069 str = num.toFixed(1);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2070 } else if (isIntegral(num * 100) \|\| num >= 100) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2071 str = num.toFixed(2);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2072 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2073 str = num.toFixed(3);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2074 if (str.slice(-1) == '0')
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2075 str = str.slice(0, -1);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2076 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2077 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2078 str = num.toFixed(0);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2079 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2080 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2081 str = num.toFixed(0).replace(/(\d)(?=(\d\d\d)+(?!\d))/g,'$1<span class="hs"></span>');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2082 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2083 str += (unit ? '<span class="rhs"> </span>' + unit : '');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2084 return str;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2085 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2086 return num;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2087 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2088 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2089
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2090 //elif isinstance(value, float):
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2091 // if value == 0.0:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2092 // return '0'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2093 // if human_readable:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2094 // if unit == '%':
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2095 // value *= 100
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2096 // precision = 2
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2097 // for i in range(10, 1, -1):
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2098 // if abs(value) < 1./(10**i):
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2099 // precision = i + 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2100 // break
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2101 // return '{value:.{precision}f}{unit_str}'.format(**locals())
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2102 // else:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2103 // return str(value)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2104
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2105
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2106 function refToPrettyString(num, refs) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2107 return refs[Math.round(num)-1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2108 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2109
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2110 function ordinalNumberToPrettyString(num, unit, tickX) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2111 num = num * tickX;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2112 var numStr = num.toString();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2113 var lastDigit = numStr[numStr.length-1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2114 var beforeLastDigit = numStr[numStr.length-2];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2115
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2116 var res = toPrettyString(num);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2117
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2118 if (lastDigit == '1' && beforeLastDigit != '1') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2119 res += "st";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2120 } else if (lastDigit == '2' && beforeLastDigit != '1') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2121 res += "nd";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2122 } else if (lastDigit == '3' && beforeLastDigit != '1') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2123 res += "rd";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2124 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2125 res += 'th';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2126 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2127
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2128 res += (unit ? '<span class="rhs"> </span>' + unit : '');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2129
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2130 return res;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2131 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2132
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2133 function frcNumberToPrettyString(num, unit, tickX, index) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2134 if (index % 2 == 0 && num > 0) num--;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2135 return toPrettyString(num) + ' ' + unit;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2136 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2137
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2138 function getMaxDecimalTick(maxY) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2139 var maxYTick = maxY;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2140 if (maxY <= 100000000000) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2141 maxYTick = Math.ceil((maxY+1)/10000000000)*10000000000;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2142 } if (maxY <= 10000000000) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2143 maxYTick = Math.ceil((maxY+1)/1000000000)*1000000000;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2144 } if (maxY <= 1000000000) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2145 maxYTick = Math.ceil((maxY+1)/100000000)*100000000;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2146 } if (maxY <= 100000000) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2147 maxYTick = Math.ceil((maxY+1)/10000000)*10000000;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2148 } if (maxY <= 10000000) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2149 maxYTick = Math.ceil((maxY+1)/1000000)*1000000;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2150 } if (maxY <= 1000000) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2151 maxYTick = Math.ceil((maxY+1)/100000)*100000;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2152 } if (maxY <= 100000) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2153 maxYTick = Math.ceil((maxY+1)/10000)*10000;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2154 } if (maxY <= 10000) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2155 maxYTick = Math.ceil((maxY+1)/1000)*1000;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2156 } if (maxY <= 1000) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2157 maxYTick = Math.ceil((maxY+1)/100)*100.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2158 } if (maxY <= 100) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2159 maxYTick = Math.ceil((maxY+1)/10)*10.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2160 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2161 return maxYTick;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2162 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2163
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2164 function getBpTickFormatter(maxY, additionalText) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2165 additionalText = additionalText \|\| '';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2166
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2167 return function(val, axis) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2168 var res;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2169 if (val == 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2170 res = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2171
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2172 } else if (axis.max >= 1000000) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2173 res = val / 1000000;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2174
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2175 if (val > axis.max - 1 \|\| val + axis.tickSize >= 1000000000) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2176 res = additionalText + toPrettyString(res, 'Mbp');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2177 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2178 res = toPrettyString(res);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2179 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2180 } else if (axis.max >= 1000) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2181 res = val / 1000;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2182
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2183 if (val > axis.max - 1 \|\| val + axis.tickSize >= 1000000) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2184 res = additionalText + toPrettyString(res, 'kbp');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2185 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2186 res = toPrettyString(res);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2187 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2188 } else if (axis.max >= 1) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2189 res = val;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2190
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2191 if (val > axis.max - 1 \|\| val + axis.tickSize >= 1000) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2192 res = additionalText + toPrettyString(res, 'bp');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2193 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2194 res = toPrettyString(res);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2195 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2196 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2197 return res;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2198 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2199 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2200
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2201 function windowsTickFormatter(v, axis) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2202 return toPrettyString(v);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2203 // var val = v.toFixed(0);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2204 // if (!gc.yAxisLabeled && val > gc.maxY) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2205 // gc.yAxisLabeled = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2206 // var res = val + ' window';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2207 // if (val > 1) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2208 // res += 's'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2209 // }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2210 // return res;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2211 // } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2212 // return val;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2213 // }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2214 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2215
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2216 function getBpLogTickFormatter(maxY) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2217 return getBpTickFormatter(maxY);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2218 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2219
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2220 function getContigNumberTickFormatter(maxX, tickX) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2221 return function (val, axis) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2222 if (typeof axis.tickSize == 'number' && val > maxX - axis.tickSize) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2223 return "       " + ordinalNumberToPrettyString(val, 'contig', tickX);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2224 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2225 return val * tickX;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2226 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2227 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2228 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2229
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2230 function getJustNumberTickFormatter(maxY, additionalText) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2231 return function (val, axis) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2232 additionalText = additionalText \|\| '';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2233 if (val > axis.max - axis.tickSize) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2234 res = toPrettyString(val) + additionalText;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2235 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2236 res = toPrettyString(val);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2237 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2238 return res;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2239 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2240 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2241
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2242 function getPercentTickFormatter(maxY, additionalText) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2243 return function (val, axis) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2244 additionalText = additionalText \|\| '';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2245 if (val > maxY + 1 \|\| val == 100) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2246 res = additionalText + toPrettyString(val, '%');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2247 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2248 res = toPrettyString(val);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2249 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2250 return res;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2251 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2252 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2253
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2254 function trim(str) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2255 return str.replace(/^\s+/g, '');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2256 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2257
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2258 function initial_spaces_to_nbsp(str, metricName) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2259 if (metricName.length > 0 && metricName[0] == ' ') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2260 str = '   ' + str;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2261 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2262 return str;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2263 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2264
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2265 function containsObject(obj, list) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2266 var i;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2267 for (i = 0; i < list.length; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2268 if (list[i] === obj) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2269 return true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2270 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2271 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2272
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2273 return false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2274 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2275
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2276 function addLegendClickEvents(info, numLegendItems, showPlotWithInfo, showReference, index) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2277 if (showReference) numLegendItems++;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2278 for (var i = 0; i < numLegendItems; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2279 $('#legend-placeholder input[name=' + i + ']').click(function() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2280 showPlotWithInfo(info, index);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2281 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2282 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2283 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2284
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2285 /*********************/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2286 /* GLOSSARY TOOLTIPS */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2287 function addTooltipIfDefinitionExists(glossary, metricName) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2288 metricName = trim(metricName);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2289
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2290 if (containsObject(metricName, Object.keys(glossary))) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2291 return '<a class="tooltip-link" rel="tooltip" title="' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2292 metricName + ' ' + glossary[metricName] + '">' + metricName + '</a>';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2293 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2294 return metricName;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2295 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2296 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2297
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2298 /*************/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2299 /* PLOT TIPS */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2300 function bindTip(placeholder, series, plot, xToPrettyStringFunction, tickX, xUnit, position, summaryPlots, unitY) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2301 var prevPoint = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2302 var prevIndex = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2303
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2304 $(placeholder).bind("plothover", function(event, pos, item) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2305 if (dragTable && dragTable.isDragging)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2306 return;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2307
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2308 if (item) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2309 if (prevPoint != item.dataIndex \|\| (summaryPlots && item.seriesIndex != prevIndex)) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2310 prevPoint = item.dataIndex;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2311 prevIndex = item.seriesIndex;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2312 var x = item.datapoint[0];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2313
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2314 showTip(item.pageX, item.pageY, plot.offset(),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2315 plot.width(), plot.height(),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2316 series, item.seriesIndex, x, item.dataIndex,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2317 xToPrettyStringFunction(x, xUnit, tickX, item.dataIndex) + ':',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2318 position, summaryPlots, unitY);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2319 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2320 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2321 $('#plot_tip').hide();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2322 $('#plot_tip_vertical_rule').hide();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2323 $('#plot_tip_horizontal_rule').hide();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2324 prevPoint = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2325 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2326 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2327 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2328
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2329 function unBindTips(placeholder) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2330 $(placeholder).unbind("plothover");
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2331 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2332
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2333 var tipElementExists = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2334 function showTip(pageX, pageY, offset, plotWidth, plotHeight,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2335 series, centralSeriesIndex, xPos, xIndex, xStr, position, summaryPlots, unitY) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2336 const LINE_HEIGHT = 16; // pixels
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2337
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2338 position = ((position != null) ? position : 'bottom right');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2339 // pageY -= LINE_HEIGHT * (centralSeriesIndex + 1.5);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2340
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2341 var directions = position.split(' ');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2342
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2343 if (!tipElementExists) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2344 $('<div id="plot_tip" class="white_stroked"></div>').appendTo('body');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2345
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2346 $('<div id="plot_tip_vertical_rule"></div>').css({
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2347 height: plotHeight,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2348 }).appendTo('body');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2349
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2350 $('<div id="plot_tip_horizontal_rule"></div>').css({
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2351 width: plotWidth,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2352 }).appendTo('body');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2353
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2354 tipElementExists = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2355 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2356
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2357 $('#plot_tip').html('').css({
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2358 top: pageY + 5 - ((directions[0] == 'top') ? LINE_HEIGHT * (series.length + 2) : 0),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2359 left: pageX + 10,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2360 }).show();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2361
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2362 $('#plot_tip_vertical_rule').html('').css({
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2363 top: offset.top,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2364 left: pageX,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2365 }).show();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2366
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2367 $('#plot_tip_horizontal_rule').html('').css({
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2368 top: pageY,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2369 left: offset.left,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2370 }).show();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2371
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2372 $('<div>' + xStr + '</div>').css({
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2373 height: LINE_HEIGHT,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2374 }).appendTo('#plot_tip');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2375
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2376 var sortedYsAndColors = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2377 for (var i = 0; i < series.length; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2378 if (!summaryPlots \|\| (summaryPlots && series[i].data[xIndex] != undefined && series[i].data[xIndex][1] != null)) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2379 sortedYsAndColors.push({
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2380 y: summaryPlots ? series[i].data[xIndex][1] : (i == centralSeriesIndex ? (series[i].data[xIndex] \|\| series[i].data[series[i].data.length - 1])[1] :
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2381 findNearestPoint(series[i].data, xPos)),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2382 color: series[i].color,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2383 label: (series[i].isReference ? 'Reference' : series[i].label),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2384 isCurrent: i == centralSeriesIndex,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2385 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2386 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2387 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2388 sortedYsAndColors.sort(function(a, b) { return a.y < b.y;});
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2389
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2390 for (i = 0; i < sortedYsAndColors.length; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2391 var item = sortedYsAndColors[i];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2392
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2393 $('<div id="tip_line' + i + '">' + toPrettyString(item.y) + (unitY ? unitY : '') +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2394 ', <span style="color: ' + item.color + ';">' + item.label + '</span></div>').css({
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2395 height: LINE_HEIGHT,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2396 "font-weight": item.isCurrent ? "bold" : "normal",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2397 }).appendTo('#plot_tip');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2398 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2399 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2400
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2401 function findNearestPoint(points, x) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2402 for (var i = 0; i < points.length; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2403 if (points[i][0] >= x) return points[i][1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2404 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2405 return points[points.length-1][1]
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2406 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2407
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2408 function addLabelToLegend(idx, label, selectedLabels, colors, link) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2409 var isChecked = (selectedLabels.length > 0 && selectedLabels.indexOf(idx.toString())) != -1 ? 'checked="checked"' : "";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2410 $('#legend-placeholder').append('<div>' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2411 '<label for="' + label + '" style="color: ' + colors[idx] + '">' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2412 '<input type="checkbox" name="' + idx + '"' + isChecked + ' id="' + label + '"> ' + label + '</label>' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2413 (link ? '<br>' + link : '') + '</div>');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2414 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2415
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2416 function getSelectedAssemblies(labels) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2417 var selectedAssemblies = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2418 var labelsMatch = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2419 var legendLabels = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2420 $('#legend-placeholder input[type="checkbox"]').each(function() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2421 legendLabels.push($(this).attr('id'));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2422 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2423 if (labels.every(function(label, i) { return ($.inArray(label, legendLabels) != -1 \|\| label == 'reference')}) ) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2424 labelsMatch = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2425 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2426 if (labelsMatch) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2427 $('#legend-placeholder input:checked[type="checkbox"]').each(function() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2428 selectedAssemblies.push($(this).attr('name'));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2429 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2430 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2431 else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2432 selectedAssemblies = Array.apply(null, {length: labels}).map(Number.call, Number);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2433 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2434 return selectedAssemblies;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2435 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2436
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2437 // Cookie functions based on http://www.quirksmode.org/js/cookies.html
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2438 // Cookies won't work for local files.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2439
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2440 var createCookie = function(name, value, days) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2441 var expires = '';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2442 if (days) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2443 var date = new Date();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2444 date.setTime(date.getTime() + (days * 24 * 60 * 60 * 1000));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2445 expires = '; expires=' + date.toGMTString();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2446 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2447 var path = document.location.pathname;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2448 document.cookie = name + '=' + value + expires + '; path=' + path;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2449 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2450
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2451 var readCookie = function(name) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2452 var nameEQ = name + '=';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2453 var ca = document.cookie.split(';');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2454 for(var i = 0; i < ca.length; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2455 var c = ca[i];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2456 while (c.charAt(0) == ' ') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2457 c = c.substring(1, c.length);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2458 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2459 if (c.indexOf(nameEQ) == 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2460 return c.substring(nameEQ.length, c.length);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2461 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2462 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2463 return null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2464 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2465
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2466 var eraseCookie = function(name) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2467 createCookie(name, '', -1);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2468 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2469
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2470
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2471 // Dean's forEach: http://dean.edwards.name/base/forEach.js
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2472 /*forEach, version 1.0
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2473 Copyright 2006, Dean Edwards
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2474 License: http://www.opensource.org/licenses/mit-license.php */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2475
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2476 // array-like enumeration
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2477 if (!Array.forEach) { // mozilla already supports this
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2478 Array.forEach = function(array, block, context) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2479 for (var i = 0; i < array.length; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2480 block.call(context, array[i], i, array);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2481 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2482 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2483 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2484
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2485 // generic enumeration
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2486 Function.prototype.forEach = function(object, block, context) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2487 for (var key in object) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2488 if (typeof this.prototype[key] == "undefined") {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2489 block.call(context, object[key], key, object);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2490 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2491 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2492 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2493
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2494 // character enumeration
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2495 String.forEach = function(string, block, context) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2496 Array.forEach(string.split(""), function(chr, index) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2497 block.call(context, chr, index, string);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2498 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2499 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2500
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2501 // globally resolve forEach enumeration
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2502 var forEach = function(object, block, context) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2503 if (object) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2504 if (object instanceof Function) { // functions have a "length" property
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2505 Function.forEach(object, block, context);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2506
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2507 } else if (object.each instanceof Function) { // jQuery
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2508 object.each(function(i, elt) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2509 block(elt);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2510 }, context);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2511
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2512 } else if (object.forEach instanceof Function) { // the object implements a custom forEach method
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2513 object.forEach(block, context);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2514
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2515 } else if (typeof object == "string") { // a string
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2516 String.forEach(object, block, context);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2517
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2518 } else if (typeof object.length == "number") { // array-like object
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2519 Array.forEach(object, block, context);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2520
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2521 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2522 Object.forEach(object, block, context);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2523 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2524 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2525 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2526
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2527
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2528 jQuery.fn.exists = function(){
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2529 return jQuery(this).length > 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2530 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2531
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2532
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2533 function Range(from, to) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2534 var r = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2535 for (var i = from; i < to; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2536 r.push(i);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2537 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2538 return r;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2539 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2540
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2541
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2542
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2543 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2544
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2545 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2546 /**
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2547 * HSV to RGB color conversion
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2548 *
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2549 * H runs from 0 to 360 degrees
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2550 * S and V run from 0 to 100
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2551 *
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2552 * Ported from the excellent java algorithm by Eugene Vishnevsky at:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2553 * http://www.cs.rit.edu/~ncs/color/t_convert.html
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2554 */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2555 function hsvToRgb(h, s, v) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2556 var r, g, b;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2557 var i;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2558 var f, p, q, t;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2559
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2560 // Make sure our arguments stay in-range
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2561 h = Math.max(0, Math.min(360, h));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2562 s = Math.max(0, Math.min(100, s));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2563 v = Math.max(0, Math.min(100, v));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2564
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2565 // We accept saturation and value arguments from 0 to 100 because that's
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2566 // how Photoshop represents those values. Internally, however, the
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2567 // saturation and value are calculated from a range of 0 to 1. We make
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2568 // That conversion here.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2569 s /= 100;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2570 v /= 100;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2571
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2572 if(s == 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2573 // Achromatic (grey)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2574 r = g = b = v;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2575 return [Math.round(r * 255), Math.round(g * 255), Math.round(b * 255)];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2576 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2577
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2578 h /= 60; // sector 0 to 5
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2579 i = Math.floor(h);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2580 f = h - i; // factorial part of h
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2581 p = v * (1 - s);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2582 q = v * (1 - s * f);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2583 t = v * (1 - s * (1 - f));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2584
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2585 switch(i) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2586 case 0:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2587 r = v;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2588 g = t;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2589 b = p;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2590 break;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2591
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2592 case 1:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2593 r = q;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2594 g = v;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2595 b = p;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2596 break;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2597
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2598 case 2:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2599 r = p;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2600 g = v;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2601 b = t;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2602 break;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2603
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2604 case 3:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2605 r = p;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2606 g = q;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2607 b = v;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2608 break;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2609
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2610 case 4:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2611 r = t;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2612 g = p;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2613 b = v;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2614 break;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2615
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2616 default: // case 5:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2617 r = v;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2618 g = p;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2619 b = q;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2620 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2621
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2622 return [Math.round(r * 255), Math.round(g * 255), Math.round(b * 255)];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2623 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2624
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2625 function hslToRgb(h, s, l){
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2626 var r, g, b;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2627
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2628 if(s == 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2629 r = g = b = l; // achromatic
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2630 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2631 function hue2rgb(p, q, t){
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2632 if(t < 0) t += 1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2633 if(t > 1) t -= 1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2634 if(t < 1/6) return p + (q - p) * 6 * t;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2635 if(t < 1/2) return q;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2636 if(t < 2/3) return p + (q - p) * (2/3 - t) * 6;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2637 return p;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2638 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2639
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2640 var q = l < 0.5 ? l * (1 + s) : l + s - l * s;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2641 var p = 2 * l - q;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2642 r = hue2rgb(p, q, h + 1/3);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2643 g = hue2rgb(p, q, h);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2644 b = hue2rgb(p, q, h - 1/3);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2645 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2646
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2647 return [Math.round(r * 255), Math.round(g * 255), Math.round(b * 255)];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2648 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2649 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2650
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2651 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2652
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2653 var gns = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2654 features: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2655 isInitialized: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2656
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2657 maxY: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2658 maxYTick: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2659 series: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2660 showWithData: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2661
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2662 yAxisLabeled: false
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2663 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2664
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2665 operons: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2666 isInitialized: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2667
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2668 maxY: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2669 maxYTick: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2670 series: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2671 showWithData: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2672
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2673 yAxisLabeled: false
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2674 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2675
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2676 draw: function (name, title, colors, filenames, data, refFeaturesNumber, tickX,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2677 placeholder, legendPlaceholder, glossary, order, scalePlaceholder) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2678 // div.html(
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2679 // "<span class='plot-header'>" + kind[0].toUpperCase() + kind.slice(1) + "s covered</span>" +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2680 // "<div class='plot-placeholder' id='" + kind + "s-plot-placeholder'></div>"
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2681 // );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2682 $(scalePlaceholder).empty();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2683
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2684 var info = gns[name];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2685
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2686 info.yAxisLabeled = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2687 var cur_filenames = data.filenames;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2688 if (!info.isInitialized) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2689 var filesFeatureInContigs = data.filesFeatureInContigs;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2690 var kind = data.kind;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2691
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2692 var plotsN = cur_filenames.length;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2693 info.series = new Array(plotsN);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2694
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2695 info.maxY = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2696 info.maxX = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2697
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2698 if (refFeaturesNumber) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2699 info.maxY = refFeaturesNumber;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2700 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2701
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2702 for (var fi = 0; fi < plotsN; fi++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2703 var index = $.inArray(cur_filenames[order[fi]], filenames);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2704 var filename = filenames[index];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2705 var featureInContigs = filesFeatureInContigs[filename];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2706
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2707 info.series[fi] = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2708 data: [[0, 0]],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2709 label: filenames[index],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2710 number: index,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2711 color: colors[index]
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2712 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2713
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2714 var contigNo = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2715 var totalFull = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2716
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2717 for (var k = 0; k < featureInContigs.length; k++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2718 contigNo += 1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2719 totalFull += featureInContigs[k];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2720
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2721 info.series[fi].data.push([contigNo, totalFull]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2722
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2723 if (info.series[fi].data[k][1] > info.maxY) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2724 info.maxY = info.series[fi].data[k][1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2725 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2726 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2727
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2728 if (featureInContigs.length > info.maxX) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2729 info.maxX = featureInContigs.length;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2730 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2731 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2732
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2733 for (i = 0; i < plotsN; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2734 if (typeof broken_scaffolds_labels !== undefined && $.inArray(filenames[order[i]], broken_scaffolds_labels) != -1) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2735 info.series[i].dashes = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2736 show: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2737 lineWidth: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2738 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2739 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2740 else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2741 info.series[i].lines = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2742 show: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2743 lineWidth: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2744 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2745 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2746 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2747
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2748 // for (i = 0; i < plotsN; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2749 // plotsData[i].points = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2750 // show: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2751 // radius: 1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2752 // fill: 1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2753 // fillColor: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2754 // }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2755 // }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2756
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2757 if (refFeaturesNumber) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2758 info.series.push({
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2759 data: [[0, refFeaturesNumber], [info.maxX, refFeaturesNumber]],
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2760 label: 'reference, ' + toPrettyString(refFeaturesNumber, 'features'),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2761 isReference: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2762 dashes: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2763 show: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2764 lineWidth: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2765 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2766 yaxis: 1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2767 number: filenames.length,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2768 color: '#000000'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2769 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2770
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2771 colors.push('#000000');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2772 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2773
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2774 info.showWithData = function(series, colors) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2775 var plot = $.plot(placeholder, series, {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2776 shadowSize: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2777 colors: colors,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2778 legend: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2779 container: $('useless-invisible-element-that-does-not-even-exist'),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2780 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2781 grid: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2782 borderWidth: 1,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2783 hoverable: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2784 autoHighlight: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2785 mouseActiveRadius: 1000,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2786 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2787 yaxis: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2788 min: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2789 // max: info.maxY,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2790 labelWidth: 120,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2791 reserveSpace: true,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2792 lineWidth: 0.5,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2793 color: '#000',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2794 tickFormatter: function (val, axis) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2795 // if (!info.yAxisLabeled && val > info.maxY) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2796 // info.yAxisLabeled = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2797 // var res = val + ' ' + kind;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2798 // if (val > 1) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2799 // res += 's'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2800 // }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2801 // return res;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2802 // } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2803 return val;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2804 // }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2805 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2806 minTickSize: 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2807 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2808 xaxis: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2809 min: 0,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2810 max: info.maxX,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2811 lineWidth: 0.5,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2812 color: '#000',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2813 tickFormatter: getContigNumberTickFormatter(info.maxX, tickX),
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2814 minTickSize: tickX
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2815 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2816 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2817
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2818 var firstLabel = $('.yAxis .tickLabel').last();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2819 firstLabel.append(' ' + name);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2820
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2821 bindTip(placeholder, series, plot, ordinalNumberToPrettyString, tickX, 'contig', 'bottom right');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2822 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2823
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2824 info.isInitialized = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2825 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2826
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2827 addLegendClickEvents(info, filenames.length, showPlotWithInfo, refFeaturesNumber);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2828
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2829 showPlotWithInfo(info);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2830
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2831 $('#contigs_are_ordered').show();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2832 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2833 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2834
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2835
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2836
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2837 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2838
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2839 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2840 /*
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2841 DT v1.0
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2842 June 26, 2008
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2843 Dan Vanderkam, http://danvk.org/DT/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2844 http://code.google.com/p/DT/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2845
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2846 This is code was based on:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2847 - Stuart Langridge's SortTable (kryogenix.org/code/browser/sorttable)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2848 - Mike Hall's draggable class (http://www.brainjar.com/dhtml/drag/)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2849 - A discussion of permuting table columns on comp.lang.javascript
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2850
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2851 Licensed under the MIT license.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2852 */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2853
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2854 // Here's the notice from Mike Hall's draggable script:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2855 //*****************************************************************************
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2856 // Do not remove this notice.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2857 //
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2858 // Copyright 2001 by Mike Hall.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2859 // See http://www.brainjar.com for terms of use.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2860 //*****************************************************************************
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2861
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2862 var classes = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2863 cell_of_emptySpace: 'cell_of_empty_space',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2864 cell_of_movingTable: 'cell_of_moving_table',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2865 newTable: 'moving_table',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2866 handle: 'drag_handle',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2867 hoveredCell: 'hovered_column_td',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2868 assemblyName: 'assembly_name',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2869
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2870 bottomCell_of_emptySpace: 'bottom_cell_of_empty_space',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2871 topCell_of_emptySpace: 'top_cell_of_empty_space',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2872 leftToCell_of_emptySpace: 'left_to_cell_of_empty_space',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2873 rightToCell_of_emptySpace: 'right_to_cell_of_empty_space',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2874
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2875 mainReportTable_id: 'main_report_table',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2876 totalReportJson_id: 'total-report-json',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2877 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2878
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2879 var dragTable = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2880 isDragging: false,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2881
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2882 // How far should the mouse move before it's considered a drag, not a click?
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2883 dragRadius2: 0, // 100,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2884 setMinDragDistance: function(x) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2885 DT.dragRadius2 = x * x;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2886 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2887
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2888 // How long should cookies persist? (in days)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2889 cookieDays: 365,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2890 setCookieDays: function(x) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2891 DT.cookieDays = x;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2892 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2893
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2894 // Determine browser and version.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2895 // TODO: eliminate browser sniffing except where it's really necessary.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2896 Browser: function() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2897 var ua, s, i;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2898
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2899 this.isIE = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2900 this.isNS = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2901 this.version = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2902 ua = navigator.userAgent;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2903
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2904 s = "MSIE";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2905 if ((i = ua.indexOf(s)) >= 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2906 this.isIE = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2907 this.version = parseFloat(ua.substr(i + s.length));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2908 return;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2909 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2910
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2911 s = "Netscape6/";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2912 if ((i = ua.indexOf(s)) >= 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2913 this.isNS = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2914 this.version = parseFloat(ua.substr(i + s.length));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2915 return;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2916 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2917
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2918 // Treat any other "Gecko" browser as NS 6.1.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2919 s = "Gecko";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2920 if ((i = ua.indexOf(s)) >= 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2921 this.isNS = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2922 this.version = 6.1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2923 return;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2924 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2925 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2926 browser: null,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2927
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2928 // Detect all draggable tables and attach handlers to their headers.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2929 init: function() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2930 // Don't initialize twice
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2931 if (arguments.callee.done)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2932 return;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2933 else
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2934 arguments.callee.done = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2935
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2936 // if (_dgtimer)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2937 // clearInterval(_dgtimer);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2938
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2939 if (!document.createElement \|\| !document.getElementsByTagName)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2940 return;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2941
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2942 DT.dragObj.zIndex = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2943 DT.browser = new DT.Browser();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2944 forEach(document.getElementsByTagName('table'), function(table) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2945 if ($(table).hasClass('draggable')) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2946 DT.makeDraggable(table);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2947 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2948 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2949 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2950
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2951 // The thead business is taken straight from sorttable.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2952 makeDraggable: function(table) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2953 DT.dragObj.table = table;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2954
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2955 if (table.getElementsByTagName('thead').length == 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2956 thead = document.createElement('thead');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2957 thead.appendChild(table.rows[0]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2958 table.insertBefore(thead, table.firstChild);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2959 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2960
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2961 // Safari doesn't support table.tHead, sigh
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2962 if (table.tHead == null) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2963 table.tHead = table.getElementsByTagName('thead')[0];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2964 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2965
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2966 var handles = $('.' + classes.handle) \|\| table.tHead.rows[0].cells;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2967
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2968 forEach(handles, function(handle) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2969 handle.onmousedown = DT.dragStart;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2970 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2971 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2972
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2973 // Global object to hold drag information.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2974 dragObj: {},
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2975
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2976 getEventPosition: function(event) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2977 var x, y;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2978 if (DT.browser.isIE) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2979 x = window.event.clientX + document.documentElement.scrollLeft
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2980 + document.body.scrollLeft;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2981 y = window.event.clientY + document.documentElement.scrollTop
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2982 + document.body.scrollTop;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2983 return {x: x, y: y};
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2984 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2985 return {x: event.pageX, y: event.pageY};
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2986 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2987
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2988 // Determine the position of this element on the page. Many thanks to Magnus
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2989 // Kristiansen for help making this work with "position: fixed" elements.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2990 getPositionOnThePage: function(elt, stopAtRelative) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2991 var ex = 0, ey = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2992 do {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2993 var curStyle = DT.browser.isIE ? elt.currentStyle
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2994 : window.getComputedStyle(elt, '');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2995 var supportFixed = !(DT.browser.isIE &&
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2996 DT.browser.version < 7);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2997 if (stopAtRelative && curStyle.position == 'relative') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2998 break;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	2999 } else if (supportFixed && curStyle.position == 'fixed') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3000 // Get the fixed el's offset
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3001 ex += parseInt(curStyle.left, 10);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3002 ey += parseInt(curStyle.top, 10);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3003 // Compensate for scrolling
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3004 ex += document.body.scrollLeft;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3005 ey += document.body.scrollTop;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3006 // End the loop
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3007 break;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3008 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3009 ex += elt.offsetLeft;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3010 ey += elt.offsetTop;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3011 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3012 } while (elt = elt.offsetParent);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3013 return {x: ex, y: ey};
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3014 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3015
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3016 // MouseDown handler -- sets up the appropriate mousemove/mouseup handlers
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3017 // and fills in the global DT.dragObj object.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3018 dragStart: function(event, id) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3019 DT.isDragging = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3020
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3021 var drag_obj = DT.dragObj;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3022
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3023 var browser = DT.browser;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3024 var clicked_node = browser.isIE ? window.event.srcElement : event.target;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3025 var pos = DT.getEventPosition(event);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3026
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3027 var table = $(clicked_node).closest('table')[0];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3028 var top_cell = $(clicked_node).closest('td, th')[0];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3029 drag_obj.topCell = top_cell;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3030 drag_obj.table = table;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3031
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3032 var col_index = top_cell.cellIndex;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3033 drag_obj.movingColIndex = drag_obj.startIndex = col_index;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3034 drag_obj.movingColWidth = $(top_cell).width();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3035
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3036 // Since a column header can't be dragged directly, duplicate its contents
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3037 // in a div and drag that instead.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3038 var new_table = DT.fullCopy(table, false);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3039
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3040 // Copy the entire column
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3041 var forEachSection = function(table, func) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3042 if (table.tHead) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3043 func(table.tHead);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3044 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3045 forEach(table.tBodies, function(tbody) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3046 func(tbody);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3047 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3048 if (table.tFoot) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3049 func(table.tFoot);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3050 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3051 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3052
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3053 forEachSection(table, function(sec) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3054 var new_sec = DT.fullCopy(sec, false);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3055
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3056 forEach(sec.rows, function(row) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3057 var cell = row.cells[col_index];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3058 var new_tr = DT.fullCopy(row, false);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3059 if (row.offsetHeight) new_tr.style.height = row.offsetHeight + "px";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3060 var new_td = DT.fullCopy(cell, true);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3061 if (cell.offsetWidth) new_td.style.width = cell.offsetWidth + "px !important";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3062 new_tr.appendChild(new_td);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3063 new_sec.appendChild(new_tr);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3064 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3065
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3066 new_table.appendChild(new_sec);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3067 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3068
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3069 var obj_pos = DT.getPositionOnThePage(top_cell, true);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3070 new_table.style.position = "absolute";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3071 new_table.style.left = obj_pos.x + "px";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3072 new_table.style.top = obj_pos.y + "px";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3073 // new_table.style.width = dragObj.origNode.offsetWidth + "px";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3074 // new_table.style.height = dragObj.origNode.offsetHeight + "px";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3075
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3076 // Hold off adding the element until this is clearly a drag.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3077 drag_obj.addedNode = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3078
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3079 drag_obj.tableContainer = drag_obj.table.parentNode \|\| document.body;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3080 drag_obj.newTable = new_table;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3081
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3082 // Save starting positions of cursor and element.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3083 drag_obj.startPos = pos;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3084 drag_obj.prevPos = pos;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3085 drag_obj.elStartLeft = parseInt(drag_obj.newTable.style.left, 10);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3086 drag_obj.elStartTop = parseInt(drag_obj.newTable.style.top, 10);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3087
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3088 if (isNaN(drag_obj.elStartLeft)) drag_obj.elStartLeft = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3089 if (isNaN(drag_obj.elStartTop)) drag_obj.elStartTop = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3090
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3091 // Update element's z-index.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3092 drag_obj.newTable.style.zIndex = ++drag_obj.zIndex;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3093
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3094 // Capture mousemove and mouseup events on the page.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3095 if (browser.isIE) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3096 document.attachEvent("onmousemove", DT.dragMove);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3097 document.attachEvent("onmouseup", DT.dragEnd);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3098 window.event.cancelBubble = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3099 window.event.returnValue = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3100 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3101 document.addEventListener("mousemove", DT.dragMove, true);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3102 document.addEventListener("mouseup", DT.dragEnd, true);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3103 event.preventDefault();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3104 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3105 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3106
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3107 // Move the floating column header with the mouse
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3108 // TODO: Reorder columns as the mouse moves for a more interactive feel.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3109 dragMove: function(event) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3110 var x, y;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3111 var drag_obj = DT.dragObj;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3112 var col_index = drag_obj.movingColIndex;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3113
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3114 // Get cursor position with respect to the page.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3115 var pos = DT.getEventPosition(event);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3116
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3117 var full_dx = drag_obj.startPos.x - pos.x;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3118 var full_dy = drag_obj.startPos.y - pos.y;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3119
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3120 if (!drag_obj.addedNode && full_dx * full_dx + full_dy * full_dy > DT.dragRadius2) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3121 // Real dragging has began, the following block performs once
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3122
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3123 // Attach a moving table
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3124 drag_obj.tableContainer.insertBefore(drag_obj.newTable, drag_obj.table);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3125 drag_obj.addedNode = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3126
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3127 // Add classes for the dragged column (original and the clone)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3128 $(drag_obj.newTable).addClass(classes.newTable);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3129 $(DT.getColumn(drag_obj.newTable)).addClass(classes.cell_of_movingTable);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3130
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3131 $(DT.getColumn(drag_obj.table, col_index)).addClass(classes.cell_of_emptySpace);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3132 $(DT.getColumn(drag_obj.table, col_index)[0]).addClass(classes.topCell_of_emptySpace);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3133 var visibleCells = $(DT.getColumn(drag_obj.table, col_index)).filter(':visible');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3134 $(visibleCells[visibleCells.length - 1]).addClass(classes.bottomCell_of_emptySpace);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3135
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3136 DT.addStylesForAdjacentColumns(col_index);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3137 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3138
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3139 // Move drag element by the same amount the cursor has moved.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3140 var style = drag_obj.newTable.style;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3141 style.left = (drag_obj.elStartLeft + pos.x - drag_obj.startPos.x) + "px";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3142 style.top = (drag_obj.elStartTop + pos.y - drag_obj.startPos.y) + "px";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3143
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3144 if (DT.browser.isIE) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3145 window.event.cancelBubble = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3146 window.event.returnValue = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3147 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3148 event.preventDefault();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3149 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3150
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3151 // If moving over an adjacent column, do swapping, swapping with the adjacent column
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3152 var column_pos_x = DT.getPositionOnThePage(DT.getColumn(drag_obj.newTable)[0]).x;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3153 var column_center_x = column_pos_x + drag_obj.movingColWidth / 2;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3154 var hovered_col_index = DT.getColumnAtPosition(drag_obj.table, column_center_x);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3155
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3156 var dx = drag_obj.prevPos.x - pos.x;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3157
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3158 if (DT.isSuitableColumnToSwap(hovered_col_index, col_index)) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3159 if (dx < 0 && hovered_col_index > col_index \|\| // moving right
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3160 dx > 0 && hovered_col_index < col_index) { // moving left
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3161 DT.removeStylesForAdjacentColumns(col_index);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3162 DT.moveColumn(drag_obj.table, col_index, hovered_col_index);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3163 DT.addStylesForAdjacentColumns(hovered_col_index);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3164 drag_obj.movingColIndex = hovered_col_index;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3165 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3166 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3167 drag_obj.prevPos = pos;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3168 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3169
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3170 removeStylesForAdjacentColumns: function(oldIndex) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3171 var table = DT.dragObj.table;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3172 var rows = table.rows;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3173 var oldColumn = DT.getColumn(table, oldIndex);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3174 $(DT.getColumn(table, oldIndex - 1)).removeClass(classes.leftToCell_of_emptySpace);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3175 $(DT.getColumn(table, oldIndex + 1)).removeClass(classes.rightToCell_of_emptySpace);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3176 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3177
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3178 addStylesForAdjacentColumns: function(index) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3179 var table = DT.dragObj.table;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3180 var rows = table.rows;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3181 var column = DT.getColumn(table, index);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3182 $(DT.getColumn(table, index - 1)).addClass(classes.leftToCell_of_emptySpace);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3183 $(DT.getColumn(table, index + 1)).addClass(classes.rightToCell_of_emptySpace);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3184 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3185
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3186 // Stop capturing mousemove and mouseup events.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3187 // Determine which (if any) column we're over and shuffle the table.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3188 dragEnd: function(event) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3189 if (DT.browser.isIE) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3190 document.detachEvent("onmousemove", DT.dragMove);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3191 document.detachEvent("onmouseup", DT.dragEnd);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3192 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3193 document.removeEventListener("mousemove", DT.dragMove, true);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3194 document.removeEventListener("mouseup", DT.dragEnd, true);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3195 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3196
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3197 var drag_obj = DT.dragObj;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3198 var col_index = drag_obj.movingColIndex;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3199
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3200 // If the floating header wasn't added, the mouse didn't move far enough.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3201 if (drag_obj.addedNode) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3202 // TODO: Move with animation
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3203 var final_pos = DT.getPositionOnThePage(DT.getColumn(drag_obj.table, col_index)[0]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3204
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3205 $(drag_obj.newTable).animate({
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3206 left: final_pos.x,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3207 top: final_pos.y,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3208 }, 'fast', function() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3209 $(drag_obj.newTable).remove();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3210 $(DT.getColumn(drag_obj.table, col_index)).removeClass(classes.cell_of_emptySpace);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3211 $(DT.getColumn(drag_obj.table, col_index)[0]).removeClass(classes.topCell_of_emptySpace);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3212 var visibleCells = $(DT.getColumn(drag_obj.table, col_index)).filter(':visible');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3213 $(visibleCells[visibleCells.length - 1]).removeClass(classes.bottomCell_of_emptySpace);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3214
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3215 DT.removeStylesForAdjacentColumns(col_index);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3216 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3217
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3218 DT.storeDrag(drag_obj.table);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3219 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3220 DT.isDragging = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3221 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3222
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3223 moveColumn: function(table, index, nextIndex) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3224 forEach(table.rows, function(row) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3225 var startCell = $(row.cells[index]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3226 var finishCell = $(row.cells[nextIndex]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3227
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3228 // startCell.animate({
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3229 // left: finishCell.offset().left,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3230 // }, 'slow', function() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3231 if (nextIndex > index) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3232 startCell.before(finishCell);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3233 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3234 startCell.after(finishCell);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3235 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3236 // });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3237 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3238 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3239
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3240 // clone an element, copying its style and class.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3241 fullCopy: function(elt, deep) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3242 if (!elt) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3243 return null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3244 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3245 var new_elt = elt.cloneNode(deep);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3246 new_elt.className = elt.className;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3247 $(new_elt).addClass('clone');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3248 forEach(elt.style, function(value, key, object) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3249 if (value == null) return;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3250 if (typeof(value) == "string" && value.length == 0) return;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3251
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3252 new_elt.style[key] = elt.style[key];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3253 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3254 return new_elt;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3255 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3256
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3257 getColumn: function(table, index) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3258 index = typeof index !== 'undefined' ? index : 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3259
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3260 if (index < 0 \|\| index >= table.rows[0].cells.length) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3261 return [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3262
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3263 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3264 var column = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3265 forEach(table.rows, function(row) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3266 column.push(row.cells[index]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3267 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3268 return column;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3269 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3270 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3271
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3272 isSuitableColumnToSwap: function(targetIndex, movingColIndex) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3273 if (targetIndex != -1) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3274 if (typeof movingColIndex === 'undefined' \|\| targetIndex != movingColIndex) { // check if equals the moving one
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3275 var top_cell = $(DT.getColumn(DT.dragObj.table, targetIndex)[0]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3276 if (top_cell.find('.' + classes.handle).addBack('.' + classes.handle).exists()) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3277 return true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3278 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3279 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3280 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3281 return false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3282 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3283
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3284 // Which column does the x value fall inside of? x should include scrollLeft.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3285 getColumnAtPosition: function(table, x) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3286 var header = table.tHead.rows[0].cells;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3287 for (var i = 0; i < header.length; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3288 //var left = header[i].offsetLeft;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3289 var pos = DT.getPositionOnThePage(header[i]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3290 //if (left <= x && x <= left + header[i].offsetWidth) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3291 var px = pos.x;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3292 var ow = header[i].offsetWidth;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3293 var xpow = pos.x + header[i].offsetWidth;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3294 if (pos.x <= x && x <= pos.x + header[i].offsetWidth) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3295 return i;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3296 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3297 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3298 return -1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3299 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3300
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3301 // Store a column swap in a cookie for posterity.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3302 storeDrag: function(table) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3303 var order = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3304 forEach(table.rows[0].cells, function(cell) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3305 var pos = cell.getAttribute('position');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3306 if (pos)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3307 order.push(pos);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3308 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3309
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3310 var order_string = order[0];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3311 for (var i = 1; i < order.length; i++)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3312 order_string += ' ' + order[i];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3313
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3314 DT.storeInCookies(order_string);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3315 DT.sendOrderToServer(order_string);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3316 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3317
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3318 storeInCookies: function(string) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3319 if (navigator.cookieEnabled) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3320 var cookieName = 'order';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3321 createCookie(cookieName, string, DT.cookieDays);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3322 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3323 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3324
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3325 sendOrderToServer: function(string) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3326 if (document.reportId) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3327 $.ajax({
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3328 type: 'GET',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3329 url: '/reorder-report-columns',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3330 dataType: 'json',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3331 data: {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3332 reportId: document.reportId,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3333 order: string,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3334 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3335 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3336 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3337 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3338 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3339
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3340 var DT = dragTable;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3341
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3342 /* ******************************************************************
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3343 Supporting functions: bundled here to avoid depending on a library
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3344 ****************************************************************** */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3345
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3346
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3347 //// Dean Edwards/Matthias Miller/John Resig
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3348 //// has a hook for DT.init already been added? (see below)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3349 //var dgListenOnLoad = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3350 //
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3351 ///* for Mozilla/Opera9 */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3352 //if (document.addEventListener) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3353 // dgListenOnLoad = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3354 // document.addEventListener("DOMContentLoaded", DT.init, false);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3355 //}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3356 //
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3357 ///* for Internet Explorer */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3358 ///@cc_on @/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3359 ///*@if (@_win32)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3360 // dgListenOnLoad = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3361 // document.write("<script id=__dt_onload defer src=//0)><\/script>");
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3362 // var script = document.getElementById("__dt_onload");
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3363 // script.onreadystatechange = function() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3364 // if (this.readyState == "complete") {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3365 // DT.init(); // call the onload handler
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3366 // }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3367 // };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3368 ///@end @/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3369 //
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3370 ///* for Safari */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3371 //if (/WebKit/i.test(navigator.userAgent)) { // sniff
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3372 // dgListenOnLoad = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3373 // var _dgtimer = setInterval(function() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3374 // if (/loaded\|complete/.test(document.readyState)) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3375 // DT.init(); // call the onload handler
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3376 // }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3377 // }, 10);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3378 //}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3379 //
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3380 ///* for other browsers */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3381 ///* Avoid this unless it's absolutely necessary (it breaks sorttable) */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3382 //if (!dgListenOnLoad) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3383 // window.onload = DT.init;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3384 //}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3385
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3386 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3387
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3388 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3389 /*! HTML5 Shiv vpre3.6 \| @afarkas @jdalton @jon_neal @rem \| MIT/GPL2 Licensed
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3390 Uncompressed source: https://github.com/aFarkas/html5shiv */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3391 (function(a,b){function h(a,b){var c=a.createElement("p"),d=a.getElementsByTagName("head")[0]\|\|a.documentElement;return c.innerHTML="x<style>"+b+"</style>",d.insertBefore(c.lastChild,d.firstChild)}function i(){var a=l.elements;return typeof a=="string"?a.split(" "):a}function j(a){var b={},c=a.createElement,f=a.createDocumentFragment,g=f();a.createElement=function(a){if(!l.shivMethods)return c(a);var f;return b[a]?f=b[a].cloneNode():e.test(a)?f=(b[a]=c(a)).cloneNode():f=c(a),f.canHaveChildren&&!d.test(a)?g.appendChild(f):f},a.createDocumentFragment=Function("h,f","return function(){var n=f.cloneNode(),c=n.createElement;h.shivMethods&&("+i().join().replace(/\w+/g,function(a){return c(a),g.createElement(a),'c("'+a+'")'})+");return n}")(l,g)}function k(a){var b;return a.documentShived?a:(l.shivCSS&&!f&&(b=!!h(a,"article,aside,details,figcaption,figure,footer,header,hgroup,nav,section{display:block}audio{display:none}canvas,video{display:inline-block;display:inline;zoom:1}[hidden]{display:none}audio[controls]{display:inline-block;display:inline;zoom:1}mark{background:#FF0;color:#000}")),g\|\|(b=!j(a)),b&&(a.documentShived=b),a)}var c=a.html5\|\|{},d=/^<\|^(?:button\|form\|map\|select\|textarea\|object\|iframe\|option\|optgroup)$/i,e=/^<\|^(?:a\|b\|button\|code\|div\|fieldset\|form\|h1\|h2\|h3\|h4\|h5\|h6\|i\|iframe\|img\|input\|label\|li\|link\|ol\|option\|p\|param\|q\|script\|select\|span\|strong\|style\|table\|tbody\|td\|textarea\|tfoot\|th\|thead\|tr\|ul)$/i,f,g;(function(){var c=b.createElement("a");c.innerHTML="<xyz></xyz>",f="hidden"in c,f&&typeof injectElementWithStyles=="function"&&injectElementWithStyles("#modernizr{}",function(b){b.hidden=!0,f=(a.getComputedStyle?getComputedStyle(b,null):b.currentStyle).display=="none"}),g=c.childNodes.length==1\|\|function(){try{b.createElement("a")}catch(a){return!0}var c=b.createDocumentFragment();return typeof c.cloneNode=="undefined"\|\|typeof c.createDocumentFragment=="undefined"\|\|typeof c.createElement=="undefined"}()})();var l={elements:c.elements\|\|"abbr article aside audio bdi canvas data datalist details figcaption figure footer header hgroup mark meter nav output progress section summary time video",shivCSS:c.shivCSS!==!1,shivMethods:c.shivMethods!==!1,type:"default",shivDocument:k};a.html5=l,k(b)})(this,document)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3392 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3393
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3394 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3395 /**
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3396 * Bootstrap.js by @fat & @mdo
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3397 * plugins: bootstrap-tooltip.js
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3398 * Copyright 2012 Twitter, Inc.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3399 * http://www.apache.org/licenses/LICENSE-2.0.txt
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3400 */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3401 !function(a){var b=function(a,b){this.init("tooltip",a,b)};b.prototype={constructor:b,init:function(b,c,d){var e,f;this.type=b,this.$element=a(c),this.options=this.getOptions(d),this.enabled=!0,this.options.trigger!="manual"&&(e=this.options.trigger=="hover"?"mouseenter":"focus",f=this.options.trigger=="hover"?"mouseleave":"blur",this.$element.on(e,this.options.selector,a.proxy(this.enter,this)),this.$element.on(f,this.options.selector,a.proxy(this.leave,this))),this.options.selector?this._options=a.extend({},this.options,{trigger:"manual",selector:""}):this.fixTitle()},getOptions:function(b){return b=a.extend({},a.fn[this.type].defaults,b,this.$element.data()),b.delay&&typeof b.delay=="number"&&(b.delay={show:b.delay,hide:b.delay}),b},enter:function(b){var c=a(b.currentTarget)[this.type](this._options).data(this.type);if(!c.options.delay\|\|!c.options.delay.show)return c.show();clearTimeout(this.timeout),c.hoverState="in",this.timeout=setTimeout(function(){c.hoverState=="in"&&c.show()},c.options.delay.show)},leave:function(b){var c=a(b.currentTarget)[this.type](this._options).data(this.type);this.timeout&&clearTimeout(this.timeout);if(!c.options.delay\|\|!c.options.delay.hide)return c.hide();c.hoverState="out",this.timeout=setTimeout(function(){c.hoverState=="out"&&c.hide()},c.options.delay.hide)},show:function(){var a,b,c,d,e,f,g;if(this.hasContent()&&this.enabled){a=this.tip(),this.setContent(),this.options.animation&&a.addClass("fade"),f=typeof this.options.placement=="function"?this.options.placement.call(this,a[0],this.$element[0]):this.options.placement,b=/in/.test(f),a.remove().css({top:0,left:0,display:"block"}).appendTo(b?this.$element:document.body),c=this.getPosition(b),d=a[0].offsetWidth,e=a[0].offsetHeight;switch(b?f.split(" ")[1]:f){case"bottom":g={top:c.top+c.height,left:c.left+c.width/2-d/2};break;case"top":g={top:c.top-e+4,left:c.left+c.width/2-d/2};break;case"left":g={top:c.top+c.height/2-e/2,left:c.left-d};break;case"right":g={top:c.top+c.height/2-e/2,left:c.left+c.width}}a.css(g).addClass(f).addClass("in")}},isHTML:function(a){return typeof a!="string"\|\|a.charAt(0)==="<"&&a.charAt(a.length-1)===">"&&a.length>=3\|\|/^(?:[^<]<[\w\W]+>[^>]$)/.exec(a)},setContent:function(){var a=this.tip(),b=this.getTitle();a.find(".tooltip-inner")[this.isHTML(b)?"html":"text"](b),a.removeClass("fade in top bottom left right")},hide:function(){function d(){var b=setTimeout(function(){c.off(a.support.transition.end).remove()},500);c.one(a.support.transition.end,function(){clearTimeout(b),c.remove()})}var b=this,c=this.tip();c.removeClass("in"),a.support.transition&&this.$tip.hasClass("fade")?d():c.remove()},fixTitle:function(){var a=this.$element;(a.attr("title")\|\|typeof a.attr("data-original-title")!="string")&&a.attr("data-original-title",a.attr("title")\|\|"").removeAttr("title")},hasContent:function(){return this.getTitle()},getPosition:function(b){return a.extend({},b?{top:0,left:0}:this.$element.offset(),{width:this.$element[0].offsetWidth,height:this.$element[0].offsetHeight})},getTitle:function(){var a,b=this.$element,c=this.options;return a=b.attr("data-original-title")\|\|(typeof c.title=="function"?c.title.call(b[0]):c.title),a},tip:function(){return this.$tip=this.$tip\|\|a(this.options.template)},validate:function(){this.$element[0].parentNode\|\|(this.hide(),this.$element=null,this.options=null)},enable:function(){this.enabled=!0},disable:function(){this.enabled=!1},toggleEnabled:function(){this.enabled=!this.enabled},toggle:function(){this[this.tip().hasClass("in")?"hide":"show"]()}},a.fn.tooltip=function(c){return this.each(function(){var d=a(this),e=d.data("tooltip"),f=typeof c=="object"&&c;e\|\|d.data("tooltip",e=new b(this,f)),typeof c=="string"&&e[c]()})},a.fn.tooltip.Constructor=b,a.fn.tooltip.defaults={animation:!0,placement:"top",selector:!1,template:'<div class="tooltip"><div class="tooltip-arrow"></div><div class="tooltip-inner"></div></div>',trigger:"hover",title:"",delay:0}}(window.jQuery)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3402 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3403
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3404 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3405 /*!
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3406 * Bootstrap.js by @fat & @mdo
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3407 * Copyright 2012 Twitter, Inc.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3408 * http://www.apache.org/licenses/LICENSE-2.0.txt
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3409 */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3410 !function(a){a(function(){"use strict",a.support.transition=function(){var a=function(){var a=document.createElement("bootstrap"),b={WebkitTransition:"webkitTransitionEnd",MozTransition:"transitionend",OTransition:"oTransitionEnd",msTransition:"MSTransitionEnd",transition:"transitionend"},c;for(c in b)if(a.style[c]!==undefined)return b[c]}();return a&&{end:a}}()})}(window.jQuery),!function(a){"use strict";var b='[data-dismiss="alert"]',c=function(c){a(c).on("click",b,this.close)};c.prototype.close=function(b){function f(){e.trigger("closed").remove()}var 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c.matcher(a)}),d=this.sorter(d),d.length?this.render(d.slice(0,this.options.items)).show():this.shown?this.hide():this):this.shown?this.hide():this},matcher:function(a){return~a.toLowerCase().indexOf(this.query.toLowerCase())},sorter:function(a){var b=[],c=[],d=[],e;while(e=a.shift())e.toLowerCase().indexOf(this.query.toLowerCase())?~e.indexOf(this.query)?c.push(e):d.push(e):b.push(e);return b.concat(c,d)},highlighter:function(a){var b=this.query.replace(/[\-\[\]{}()+?.,\\\^$\|#\s]/g,"\\$&");return a.replace(new RegExp("("+b+")","ig"),function(a,b){return"<strong>"+b+"</strong>"})},render:function(b){var c=this;return b=a(b).map(function(b,d){return b=a(c.options.item).attr("data-value",d),b.find("a").html(c.highlighter(d)),b[0]}),b.first().addClass("active"),this.$menu.html(b),this},next:function(b){var c=this.$menu.find(".active").removeClass("active"),d=c.next();d.length\|\|(d=a(this.$menu.find("li")[0])),d.addClass("active")},prev:function(a){var b=this.$menu.find(".active").removeClass("active"),c=b.prev();c.length\|\|(c=this.$menu.find("li").last()),c.addClass("active")},listen:function(){this.$element.on("blur",a.proxy(this.blur,this)).on("keypress",a.proxy(this.keypress,this)).on("keyup",a.proxy(this.keyup,this)),(a.browser.webkit\|\|a.browser.msie)&&this.$element.on("keydown",a.proxy(this.keypress,this)),this.$menu.on("click",a.proxy(this.click,this)).on("mouseenter","li",a.proxy(this.mouseenter,this))},keyup:function(a){switch(a.keyCode){case 40:case 38:break;case 9:case 13:if(!this.shown)return;this.select();break;case 27:if(!this.shown)return;this.hide();break;default:this.lookup()}a.stopPropagation(),a.preventDefault()},keypress:function(a){if(!this.shown)return;switch(a.keyCode){case 9:case 13:case 27:a.preventDefault();break;case 38:if(a.type!="keydown")break;a.preventDefault(),this.prev();break;case 40:if(a.type!="keydown")break;a.preventDefault(),this.next()}a.stopPropagation()},blur:function(a){var b=this;setTimeout(function(){b.hide()},150)},click:function(a){a.stopPropagation(),a.preventDefault(),this.select()},mouseenter:function(b){this.$menu.find(".active").removeClass("active"),a(b.currentTarget).addClass("active")}},a.fn.typeahead=function(c){return this.each(function(){var d=a(this),e=d.data("typeahead"),f=typeof c=="object"&&c;e\|\|d.data("typeahead",e=new b(this,f)),typeof c=="string"&&e[c]()})},a.fn.typeahead.defaults={source:[],items:8,menu:'<ul class="typeahead dropdown-menu"></ul>',item:'<li><a href="#"></a></li>'},a.fn.typeahead.Constructor=b,a(function(){a("body").on("focus.typeahead.data-api",'[data-provide="typeahead"]',function(b){var c=a(this);if(c.data("typeahead"))return;b.preventDefault(),c.typeahead(c.data())})})}(window.jQuery);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3411 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3412
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3413 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3414 /* ===========================================================
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3415 * bootstrap-tooltip.js v2.0.4
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3416 * http://twitter.github.com/bootstrap/javascript.html#tooltips
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3417 * Inspired by the original jQuery.tipsy by Jason Frame
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3418 * ===========================================================
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3419 * Copyright 2012 Twitter, Inc.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3420 *
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3421 * Licensed under the Apache License, Version 2.0 (the "License");
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3422 * you may not use this file except in compliance with the License.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3423 * You may obtain a copy of the License at
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3424 *
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3425 * http://www.apache.org/licenses/LICENSE-2.0
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3426 *
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3427 * Unless required by applicable law or agreed to in writing, software
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3428 * distributed under the License is distributed on an "AS IS" BASIS,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3429 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3430 * See the License for the specific language governing permissions and
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3431 * limitations under the License.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3432 * ========================================================== */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3433
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3434
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3435 !function ($) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3436
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3437 "use strict"; // jshint ;_;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3438
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3439
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3440 /* TOOLTIP PUBLIC CLASS DEFINITION
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3441 * =============================== */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3442
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3443 var Tooltip = function (element, options) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3444 this.init('tooltip', element, options)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3445 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3446
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3447 Tooltip.prototype = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3448
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3449 constructor: Tooltip
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3450
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3451 , init: function (type, element, options) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3452 var eventIn
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3453 , eventOut;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3454
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3455 this.type = type;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3456 this.$element = $(element);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3457 this.options = this.getOptions(options);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3458 this.enabled = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3459
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3460 if (this.options.trigger != 'manual') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3461 eventIn = this.options.trigger == 'hover' ? 'mouseenter' : 'focus';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3462 eventOut = this.options.trigger == 'hover' ? 'mouseleave' : 'blur';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3463 this.$element.on(eventIn, this.options.selector, $.proxy(this.enter, this));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3464 this.$element.on(eventOut, this.options.selector, $.proxy(this.leave, this));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3465 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3466
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3467 this.options.selector ?
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3468 (this._options = $.extend({}, this.options, { trigger: 'manual', selector: '' })) :
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3469 this.fixTitle();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3470 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3471
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3472 , getOptions: function (options) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3473 options = $.extend({}, $.fn[this.type].defaults, options, this.$element.data())
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3474
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3475 if (options.delay && typeof options.delay == 'number') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3476 options.delay = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3477 show: options.delay
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3478 , hide: options.delay
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3479 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3480 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3481
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3482 return options;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3483 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3484
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3485 , enter: function (e) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3486 if (dragTable && dragTable.isDragging)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3487 return;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3488
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3489 var self = $(e.currentTarget)[this.type](this._options).data(this.type);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3490
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3491 if (!self.options.delay \|\| !self.options.delay.show) self.show();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3492
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3493 clearTimeout(this.timeout);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3494 self.hoverState = 'in';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3495 this.timeout = setTimeout(
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3496 function() { if (self.hoverState == 'in') self.show(); },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3497 self.options.delay.show
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3498 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3499 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3500
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3501 , leave: function (e) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3502 var self = $(e.currentTarget)[this.type](this._options).data(this.type);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3503
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3504 if (this.timeout) clearTimeout(this.timeout);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3505 if (!self.options.delay \|\| !self.options.delay.hide) self.hide();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3506
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3507 self.hoverState = 'out';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3508 this.timeout = setTimeout(
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3509 function() { if (self.hoverState == 'out') self.hide() },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3510 self.options.delay.hide
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3511 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3512 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3513
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3514 , show: function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3515 var $tip
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3516 , inside
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3517 , pos
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3518 , actualWidth
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3519 , actualHeight
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3520 , placement
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3521 , tp;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3522
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3523 if (this.hasContent() && this.enabled) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3524 $tip = this.tip();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3525 this.setContent();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3526
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3527 if (this.options.animation) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3528 $tip.addClass('fade');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3529 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3530
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3531 placement = typeof this.options.placement == 'function' ?
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3532 this.options.placement.call(this, $tip[0], this.$element[0]) :
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3533 this.options.placement;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3534
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3535 inside = /in/.test(placement);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3536
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3537 $tip
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3538 .remove()
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3539 .css({ top: 0, left: 0, display: 'block' })
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3540 .appendTo(inside ? this.$element : document.body);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3541
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3542 pos = this.getPosition(inside);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3543
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3544 actualWidth = $tip[0].offsetWidth;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3545 actualHeight = $tip[0].offsetHeight;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3546
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3547 switch (inside ? placement.split(' ')[1] : placement) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3548 case 'bottom':
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3549 tp = {top: pos.top + pos.height, left: pos.left + pos.width / 2 - actualWidth / 2};
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3550 break;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3551 case 'top': // modificated by Vlad Saveliev: +4px to top position
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3552 tp = {top: pos.top - actualHeight + 4, left: pos.left + pos.width / 2 - actualWidth / 2};
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3553 break;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3554 case 'left':
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3555 tp = {top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left - actualWidth};
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3556 break;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3557 case 'right':
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3558 tp = {top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left + pos.width};
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3559 break;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3560 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3561
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3562 $tip
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3563 .css(tp)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3564 .addClass(placement)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3565 .addClass('in');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3566 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3567 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3568
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3569 , isHTML: function(text) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3570 // html string detection logic adapted from jQuery
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3571 return typeof text != 'string'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3572 \|\| ( text.charAt(0) === "<"
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3573 && text.charAt( text.length - 1 ) === ">"
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3574 && text.length >= 3
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3575 ) \|\| /^(?:[^<]<[\w\W]+>[^>]$)/.exec(text);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3576 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3577
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3578 , setContent: function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3579 var $tip = this.tip()
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3580 , title = this.getTitle();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3581
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3582 $tip.find('.tooltip-inner')[this.isHTML(title) ? 'html' : 'text'](title);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3583 $tip.removeClass('fade in top bottom left right');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3584 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3585
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3586 , hide: function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3587 var that = this
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3588 , $tip = this.tip();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3589
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3590 $tip.removeClass('in');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3591
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3592 function removeWithAnimation() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3593 var timeout = setTimeout(function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3594 $tip.off($.support.transition.end).remove()
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3595 }, 500);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3596
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3597 $tip.one($.support.transition.end, function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3598 clearTimeout(timeout);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3599 $tip.remove();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3600 })
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3601 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3602
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3603 $.support.transition && this.$tip.hasClass('fade') ?
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3604 removeWithAnimation() :
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3605 $tip.remove()
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3606 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3607
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3608 , fixTitle: function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3609 var $e = this.$element;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3610 if ($e.attr('title') \|\| typeof($e.attr('data-original-title')) != 'string') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3611 $e.attr('data-original-title', $e.attr('title') \|\| '').removeAttr('title');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3612 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3613 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3614
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3615 , hasContent: function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3616 return this.getTitle();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3617 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3618
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3619 , getPosition: function (inside) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3620 return $.extend({}, (inside ? {top: 0, left: 0} : this.$element.offset()), {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3621 width: this.$element[0].offsetWidth
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3622 , height: this.$element[0].offsetHeight
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3623 })
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3624 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3625
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3626 , getTitle: function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3627 var title
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3628 , $e = this.$element
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3629 , o = this.options;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3630
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3631 title = $e.attr('data-original-title')
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3632 \|\| (typeof o.title == 'function' ? o.title.call($e[0]) : o.title);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3633
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3634 return title;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3635 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3636
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3637 , tip: function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3638 return this.$tip = this.$tip \|\| $(this.options.template);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3639 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3640
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3641 , validate: function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3642 if (!this.$element[0].parentNode) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3643 this.hide();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3644 this.$element = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3645 this.options = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3646 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3647 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3648
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3649 , enable: function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3650 this.enabled = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3651 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3652
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3653 , disable: function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3654 this.enabled = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3655 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3656
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3657 , toggleEnabled: function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3658 this.enabled = !this.enabled;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3659 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3660
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3661 , toggle: function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3662 this[this.tip().hasClass('in') ? 'hide' : 'show']();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3663 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3664
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3665 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3666
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3667
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3668 /* TOOLTIP PLUGIN DEFINITION
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3669 * ========================= */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3670
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3671 $.fn.tooltip = function ( option ) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3672 return this.each(function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3673 var $this = $(this)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3674 , data = $this.data('tooltip')
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3675 , options = typeof option == 'object' && option;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3676 if (!data) $this.data('tooltip', (data = new Tooltip(this, options)));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3677 if (typeof option == 'string') data[option]();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3678 })
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3679 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3680
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3681 $.fn.tooltip.Constructor = Tooltip;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3682
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3683 $.fn.tooltip.defaults = {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3684 animation: true
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3685 , placement: 'top'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3686 , selector: false
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3687 , template: '<div class="tooltip"><div class="tooltip-arrow"></div><div class="tooltip-inner"></div></div>'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3688 , trigger: 'hover'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3689 , title: ''
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3690 , delay: 0
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3691 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3692
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3693 }(window.jQuery);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3694
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3695 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3696
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3697 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3698 function showPlotWithInfo(info, index) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3699 var newSeries = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3700 var newColors = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3701 var oldSeries = info.series;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3702 var usingSeries;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3703 var sortOrder;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3704 if ($("input[name=sortRefs]")[0])
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3705 sortOrder = getSortOrder();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3706 if (index != undefined) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3707 oldSeries = info.series[index];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3708 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3709 if (sortOrder == 'alphabet') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3710 usingSeries = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3711 sortedRefs = info.references.slice(0).sort();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3712 for(var i = 0; i < oldSeries.length; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3713 usingSeries.push($.extend(true, {}, oldSeries[i]));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3714 for(var j = 0; j < info.references.length; j++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3715 usingSeries[i].data[j][1] = oldSeries[i].data[info.references.indexOf(sortedRefs[j])][1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3716 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3717 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3718 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3719 else usingSeries = oldSeries;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3720 $('#legend-placeholder').find('input[type="checkbox"]:checked').each(function() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3721 var number = $(this).attr('name');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3722 if (number && usingSeries && usingSeries.length > 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3723 var i = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3724 do {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3725 var series = usingSeries[i];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3726 i++;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3727 } while (i <= usingSeries.length && (series == null \|\| series.number != number));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3728 //
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3729 if (i <= usingSeries.length) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3730 newSeries.push(series);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3731 newColors.push(series.color);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3732 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3733 console.log('no series with number ' + number);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3734 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3735 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3736 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3737 if (sortOrder) sortReferences(sortOrder, info);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3738
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3739 if (newSeries.length === 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3740 newSeries.push({
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3741 data: []
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3742 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3743 newColors.push('#FFF');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3744 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3745
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3746 info.showWithData(newSeries, newColors);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3747 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3748
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3749 function recoverOrderFromCookies() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3750 if (!navigator.cookieEnabled)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3751 return null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3752
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3753 var order_string = readCookie("order");
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3754 if (!order_string)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3755 return null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3756
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3757 var order = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3758 var fail = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3759 forEach(order_string.split(' '), function(val) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3760 val = parseInt(val);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3761 if (isNaN(val))
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3762 fail = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3763 else
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3764 order.push(val);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3765 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3766
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3767 if (fail)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3768 return null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3769
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3770 return order;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3771 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3772
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3773
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3774 function readJson(what) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3775 var result;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3776 try {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3777 result = JSON.parse($('#' + what + '-json').html());
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3778 } catch (e) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3779 result = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3780 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3781 return result;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3782 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3783
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3784
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3785 function getToggleFunction(assembliesNames, order, name, title, drawPlot, data, refPlotValue, tickX) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3786 return function() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3787 this.parentNode.getElementsByClassName('selected-switch')[0].className = 'plot-switch dotted-link';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3788 this.className = 'plot-switch selected-switch';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3789 togglePlots(assembliesNames, order, name, title, drawPlot, data, refPlotValue, tickX)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3790 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3791 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3792
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3793 function togglePlots(assembliesNames, order, name, title, drawPlot, data, refPlotValue, tickX) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3794 var plotPlaceholder = document.getElementById('plot-placeholder');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3795 var legendPlaceholder = document.getElementById('legend-placeholder');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3796 var scalePlaceholder = document.getElementById('scale-placeholder');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3797
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3798 var glossary = JSON.parse($('#glossary-json').html());
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3799
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3800 if (name === 'cumulative') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3801 $(plotPlaceholder).addClass('cumulative-plot-placeholder');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3802 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3803 $(plotPlaceholder).removeClass('cumulative-plot-placeholder');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3804 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3805
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3806 $('#contigs_are_ordered').hide();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3807 $('#gc_info').hide();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3808 $('#gc_contigs_info').hide();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3809 $('#frc_info').hide();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3810
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3811 var selectedAssemblies = getSelectedAssemblies(assembliesNames);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3812 var sortBtnClass;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3813 if ($("input[name=sortRefs]")[0]) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3814 sortBtnClass = getSortRefsRule();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3815 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3816 $('#legend-placeholder').empty();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3817 assembliesNames.forEach(function(filename, i) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3818 addLabelToLegend(i, filename, selectedAssemblies, colors);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3819 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3820 if (refPlotValue) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3821 $('#legend-placeholder').append(
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3822 '<div id="reference-label">' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3823 '<label for="reference" style="color: #000000;">' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3824 '<input type="checkbox" name="' + assembliesNames.length +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3825 '" checked="checked" id="reference"> ' + 'reference' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3826 '</label>' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3827 '</div>'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3828 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3829 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3830 if (sortBtnClass) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3831 addSortRefsBtn(sortBtnClass);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3832 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3833
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3834 drawPlot(name, title, colors, assembliesNames, data, refPlotValue, tickX,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3835 plotPlaceholder, legendPlaceholder, glossary, order, scalePlaceholder);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3836 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3837
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3838 function makePlot(firstPlot, assembliesNames, order, name, title, drawPlot, data, refPlotValue, tickX) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3839 var switchSpan = document.createElement('span');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3840 switchSpan.id = name + '-switch';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3841 switchSpan.innerHTML = title;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3842 var plotsSwitchesDiv = document.getElementById('plots-switches');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3843 plotsSwitchesDiv.appendChild(switchSpan);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3844
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3845 if (firstPlot) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3846 switchSpan.className = 'plot-switch selected-switch';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3847 togglePlots(assembliesNames, order, name, title, drawPlot, data, refPlotValue, tickX);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3848 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3849 switchSpan.className = 'plot-switch dotted-link';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3850 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3851
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3852 $(switchSpan).click(getToggleFunction(assembliesNames, order, name, title, drawPlot, data, refPlotValue, tickX));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3853 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3854 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3855
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3856 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3857 String.prototype.trunc =
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3858 function(n){
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3859 return this.substr(0, n-1) + (this.length > n ? '…' : '');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3860 };
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3861
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3862
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3863 function getColor (hue, lightness) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3864 lightness = lightness ? lightness : 92;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3865 var rgb = hslToRgb(hue / 360, 0.8, lightness / 100);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3866 return '#' + rgb[0].toString(16) + rgb[1].toString(16) + rgb[2].toString(16);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3867 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3868
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3869 function getMedian (x) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3870 if (x.length == 0) return null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3871 if (x.length % 2 == 1) return x[(x.length - 1) / 2];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3872 else return (x[(x.length / 2) - 1] + x[(x.length / 2)]) / 2;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3873 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3874
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3875 function toggleSecondary(event, caller) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3876 event = event \|\| window.event;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3877 if(event.target.nodeName == "IMG") return;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3878 if (!caller.hasClass('primary') \|\| caller.hasClass('not_extend')) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3879 return;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3880 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3881 var nextRow = caller.next('.content-row');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3882 $(caller).find('.metric-name').toggleClass('collapsed').toggleClass('expanded');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3883
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3884 while (!nextRow.hasClass('primary') && (nextRow.length > 0)) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3885 nextRow.toggleClass('secondary_hidden');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3886 nextRow.find('.left_column_td').css('background-color', '#E8E8E8');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3887 nextRow = nextRow.next('.content-row');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3888 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3889 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3890
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3891 function setUpHeatMap(table) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3892
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3893 (function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3894 $(function () {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3895 $('tr.group_empty').removeClass('row_hidden');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3896 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3897 })();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3898
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3899 $('#main_report').append(table);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3900 var rows = $('#main_report_table').find('.content-row');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3901 var showHeatmap = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3902 for (var rows_n = 0; rows_n < rows.length; rows_n++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3903 if ($(rows[rows_n]).find('td[number]').length > 1) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3904 showHeatmap = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3905 break
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3906 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3907 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3908
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3909 if (showHeatmap) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3910 var canvas = document.getElementById('gradientHeatmap');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3911 var context = canvas.getContext('2d');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3912 context.rect(0, 0, canvas.width, canvas.height);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3913
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3914 var gradient = context.createLinearGradient(0, 0, canvas.width, canvas.height);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3915 gradient.addColorStop(0, getColor(0, 65));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3916 gradient.addColorStop(0.5, 'white');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3917 gradient.addColorStop(1, getColor(240, 65));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3918 canvas.style.border = "0px solid rgba(0, 0, 0, .1)";
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3919 context.fillStyle = gradient;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3920 context.fill();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3921 $('#heatmaps_chbox').change(function(){
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3922 if($(this).is(':checked')) toggleHeatMap('on');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3923 else toggleHeatMap('off');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3924 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3925 toggleHeatMap('on');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3926 $('#heatmap_header').show();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3927 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3928 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3929
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3930 function toggleHeatMap(state){
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3931 var rows = $('#main_report_table').find('.content-row');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3932 for (var rows_n = 0; rows_n < rows.length; rows_n++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3933 var cells = $(rows[rows_n]).find('td[number]');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3934 if (state == 'on') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3935 var quality = $(rows[rows_n]).attr('quality');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3936 heatMapOneRow(cells, quality);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3937 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3938 else cells.each(function (i) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3939 $(this).css('background', 'white');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3940 $(this).css('color', 'black');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3941 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3942 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3943 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3944
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3945 function heatMapOneRow (cells, quality) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3946 if (quality == 'Equal')
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3947 return;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3948 var BLUE_HUE = 240;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3949 var BLUE_OUTER_BRT = 55;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3950 var BLUE_INNER_BRT = 65;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3951
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3952 var RED_HUE = 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3953 var RED_OUTER_BRT = 50;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3954 var RED_INNER_BRT = 60;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3955
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3956 var MIN_NORMAL_BRT = 80;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3957 var MEDIAN_BRT = 100;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3958
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3959 var numbers = $.map(cells, function (cell) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3960 return parseFloat($(cell).attr('number'));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3961 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3962
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3963 var min = Math.min.apply(null, numbers);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3964 var max = Math.max.apply(null, numbers);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3965
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3966 var topHue = BLUE_HUE;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3967 var lowHue = RED_HUE;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3968
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3969 var innerTopBrt = BLUE_INNER_BRT;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3970 var outerTopBrt = BLUE_OUTER_BRT;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3971 var innerLowBrt = RED_INNER_BRT;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3972 var outerLowBrt = RED_OUTER_BRT;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3973
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3974 if (quality == 'Less is better') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3975 topHue = RED_HUE;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3976 lowHue = BLUE_HUE;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3977
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3978 innerTopBrt = RED_INNER_BRT;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3979 outerTopBrt = RED_OUTER_BRT;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3980 innerLowBrt = BLUE_INNER_BRT;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3981 outerLowBrt = BLUE_OUTER_BRT;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3982 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3983
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3984 var twoCols = cells.length == 2;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3985
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3986 if (max == min) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3987 $(cells).css('color', MEDIAN_BRT);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3988 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3989 var sortedValues = numbers.slice().sort(function(a, b) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3990 return a - b;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3991 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3992 var median = getMedian(sortedValues);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3993 var l = numbers.length;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3994 var q1 = sortedValues[Math.floor((l - 1) / 4)];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3995 var q3 = sortedValues[Math.floor((l - 1) * 3 / 4)];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3996
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3997 var d = q3 - q1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3998 var low_outer_fence = q1 - 3 * d;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	3999 var low_inner_fence = q1 - 1.5 * d;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4000 var top_inner_fence = q3 + 1.5 * d;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4001 var top_outer_fence = q3 + 3 * d;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4002 cells.each(function (i) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4003 var number = numbers[i];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4004 if (number < low_outer_fence) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4005 $(this).css('background', getColor(lowHue, twoCols ? null : outerLowBrt));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4006 if (twoCols != true) $(this).css('color', 'white');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4007 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4008 else if (number < low_inner_fence) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4009 $(this).css('background', getColor(lowHue, twoCols ? null : innerLowBrt));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4010 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4011 else if (number < median) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4012 var k = (MEDIAN_BRT - MIN_NORMAL_BRT) / (median - low_inner_fence);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4013 var brt = Math.round(MEDIAN_BRT - (median - number) * k);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4014 $(this).css('background', getColor(lowHue, twoCols ? null : brt));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4015 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4016 else if (number > top_inner_fence) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4017 $(this).css('background', getColor(topHue, twoCols ? null : innerTopBrt));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4018 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4019 else if (number > top_outer_fence) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4020 $(this).css('background', getColor(topHue, twoCols ? null : outerTopBrt));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4021 if (twoCols != true) $(this).css('color', 'white');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4022 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4023 else if (number > median) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4024 var k = (MEDIAN_BRT - MIN_NORMAL_BRT) / (top_inner_fence - median);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4025 var brt = Math.round(MEDIAN_BRT - (number - median) * k);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4026 $(this).css('background', getColor(topHue, twoCols ? null : brt));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4027 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4028 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4029 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4030 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4031 function extendedClick() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4032 $('.row_to_hide').toggleClass('row_hidden');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4033
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4034 var link = $('#extended_report_link');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4035 if (link.html() == 'Extended report') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4036 link.html('Short report');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4037 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4038 link.html('Extended report');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4039 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4040 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4041
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4042 function buildExtendedLinkClick() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4043 return '<p id="extended_link"><a class="dotted-link" id="extended_report_link" onclick="extendedClick($(this))">Extended report</a></p>';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4044 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4045
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4046 function appendIcarusLinks() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4047 if (icarusLinks = readJson('icarus')) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4048 if (icarusLinks.links != undefined) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4049 var links = '';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4050 for (var link_n = 0; link_n < icarusLinks.links.length; link_n++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4051 //links += '<a href="' + icarusLinks.links[link_n] + '">' + icarusLinks.links_names[link_n] + '</a><br>'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4052 links += '<a class="btn btn-default btn-xs" role="button" href="' + icarusLinks.links[link_n] + '">' + icarusLinks.links_names[link_n] + '</a><br>'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4053 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4054 $('#icarus').html(links);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4055 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4056 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4057 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4058
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4059 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4060
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4061
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4062 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4063 var colors = ["#FF0000"];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4064 var broken_scaffolds_labels = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4065 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4066 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4067 function addRow(metric, mainMetrics, rowName, group_n, order, glossary, isExpandable, isPrimary) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4068 (function(group_n) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4069 var id_group = '#group_' + group_n;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4070 $(function() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4071 $(id_group).removeClass('group_empty');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4072 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4073 })(group_n);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4074
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4075 var table = '';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4076 metricName = metric.metricName;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4077 var quality = metric.quality;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4078 var values = metric.values;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4079
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4080 var trClass = 'content-row';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4081 if (metric.isMain \|\| $.inArray(metricName, mainMetrics) > -1) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4082 (function(group_n) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4083 var id_group = '#group_' + group_n;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4084 $(function() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4085 $(id_group).removeClass('row_hidden');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4086 $(id_group).removeClass('row_to_hide');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4087 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4088 })(group_n);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4089 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4090 trClass = 'content-row row_hidden row_to_hide';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4091 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4092 var tdClass = '';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4093 if (!isPrimary) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4094 trClass += ' secondary_hidden';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4095 tdClass = 'secondary_td';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4096 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4097 else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4098 trClass += ' primary';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4099 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4100 if (isExpandable) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4101 table +=
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4102 '<tr class="' + trClass + '" quality="' + quality + '" onclick="toggleSecondary(event, $(this))">' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4103 '<td class="left_column_td ' + tdClass + '">' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4104 '<span class="metric-name expandable collapsed">' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4105 initial_spaces_to_nbsp(addTooltipIfDefinitionExists(glossary, rowName.trunc(55)), metricName) +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4106 '</span></td>';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4107 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4108 else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4109 table +=
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4110 '<tr class="' + trClass + '" quality="' + quality + '">' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4111 '<td class="left_column_td"><span class="metric-name">' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4112 initial_spaces_to_nbsp(addTooltipIfDefinitionExists(glossary, rowName.trunc(55)), metricName) +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4113 '</span>' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4114 '</td>';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4115 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4116 for (var val_n = 0; val_n < values.length; val_n++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4117 value = values[order[val_n]];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4118
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4119 if (value === null \|\| value === '') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4120 table += '<td><span>-</span></td>';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4121 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4122 if (typeof value === 'number') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4123 table +=
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4124 '<td number="' + value + '"><span>'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4125 + toPrettyString(value) + '</span></td>';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4126 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4127 var result = /([0-9\.]+)(.*)/.exec(value);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4128 var num = parseFloat(result[1]);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4129 var rest = result[2];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4130 // alert('value = ' + value + ' result = ' + result);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4131
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4132 // var num = parseFloat(value);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4133
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4134 if (num !== null) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4135 table += '<td number="' + num + '"><span>' + toPrettyString(num) + rest + '</span></td>';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4136 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4137 table += '<td><span>' + value + '</span></td>';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4138 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4139 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4140 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4141 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4142 return table;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4143 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4144
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4145 function getSubRows(subReports, groupName, metricName) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4146 rows = [];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4147 if (subReports) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4148 for (var report_n = 0; report_n < subReports.length; report_n++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4149 subReport = subReports[report_n];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4150 for (var group_n = 0; group_n < subReport.length; group_n++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4151 if (subReport[group_n][0] != groupName)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4152 continue;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4153 metrics = subReport[group_n][1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4154 for (var metric_n = 0; metric_n < metrics.length; metric_n++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4155 if (metrics[metric_n].metricName == metricName)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4156 rows.push(metrics[metric_n])
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4157 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4158 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4159 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4160 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4161 return rows;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4162 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4163
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4164 function buildTotalReport(assembliesNames, totalReport, order, glossary, qualities, mainMetrics) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4165 var report = totalReport.report,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4166 date = totalReport.date,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4167 minContig = totalReport.minContig,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4168 referenceName = totalReport.referenceName,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4169 subReports = totalReport.subreports,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4170 subReferences = totalReport.subreferences;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4171 $('#report_date').html('<p>' + date + '</p>');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4172 var extraInfo = '<p>All statistics are based on contigs of size >= ' + minContig +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4173 '<span class="rhs"> </span>bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs).</p>';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4174 $('#extrainfo').html(extraInfo);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4175 $('#plot-caption').show();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4176
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4177 var table = '';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4178 table += '<table cellspacing="0" class="report_table draggable" id="main_report_table">';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4179
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4180 if (referenceName) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4181 $('#reference_name').show().find('.val').html(referenceName);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4182 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4183
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4184 if (report[0][0] == 'Genome statistics') { // if first section is empty (no reference), swap it and w/o reference statistics
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4185 var genomeMetrics = report[0][1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4186 var isSectionEmpty = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4187 for (var index = 0; index < genomeMetrics.length; index++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4188 if (genomeMetrics[index].isMain \|\| $.inArray(genomeMetrics[index].metric_name, mainMetrics) > -1)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4189 isSectionEmpty = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4190 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4191 if (isSectionEmpty) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4192 for (var group_n = 0; group_n < report.length; group_n++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4193 if (report[group_n][0] == 'Statistics without reference') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4194 report[0] = report.splice(group_n, 1, report[0])[0];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4195 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4196 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4197 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4198 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4199
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4200 for (var group_n = 0; group_n < report.length; group_n++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4201 var group = report[group_n];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4202 var groupName = group[0];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4203 var metrics = group[1];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4204 var width = assembliesNames.length + 1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4205
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4206 if (groupName == 'Reference statistics') {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4207 var referenceValues = {};
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4208 for (var metric_n = 0; metric_n < metrics.length; metric_n++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4209 var metric = metrics[metric_n];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4210 var metricName = metric.metricName;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4211 var value = metric.values[0];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4212 referenceValues[metricName] = value;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4213 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4214 var refLen = referenceValues['Reference length'];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4215 var refFragments = referenceValues['Reference fragments'];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4216 var refGC = referenceValues['Reference GC (%)'];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4217 var refFeatures = referenceValues['Reference genomic features'];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4218 var refOperons = referenceValues['Reference operons'];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4219 var refChr = referenceValues['Reference chromosomes'];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4220 var totalReads = referenceValues['# total reads'];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4221 var refMappedReads = referenceValues['Reference mapped (%)'];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4222 var refPairedReads = referenceValues['Reference properly paired (%)'];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4223 var estRefLen = referenceValues['Estimated reference length'];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4224
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4225 if (refLen)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4226 $('#reference_length').show().find('.val').html(toPrettyString(refLen));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4227 else if (estRefLen)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4228 $('#est_reference_length').show().find('.val').html(toPrettyString(estRefLen));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4229 if (refFragments) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4230 $('#reference_fragments').show().find('.val').html(refFragments);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4231 if (refFragments > 1)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4232 $('#reference_fragments').find('.plural_ending').show();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4233 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4234 if (refGC)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4235 $('#reference_gc').show().find('.val').html(toPrettyString(refGC));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4236 if (refFeatures)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4237 $('#reference_features').show().find('.val').html(toPrettyString(refFeatures));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4238 if (refOperons)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4239 $('#reference_operons').show().find('.val').html(toPrettyString(refOperons));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4240 if (refChr) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4241 $('#reference_chr').show().find('.val').html(refChr);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4242 if (refChr > 1)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4243 $('#reference_chr').find('.plural_ending').show();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4244 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4245 if (totalReads)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4246 $('#total_reads').show().find('.val').html(toPrettyString(totalReads));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4247 if (refMappedReads !== undefined)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4248 $('#reference_mapped_reads').show().find('.val').html(toPrettyString(refMappedReads));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4249 if (refPairedReads !== undefined)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4250 $('#reference_paired_reads').show().find('.val').html(toPrettyString(refPairedReads));
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4251 continue;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4252 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4253
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4254 if (group_n == 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4255 table += '<tr class="top_row_tr"><td id="top_left_td" class="left_column_td"><span>' + groupName + '</span></td>';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4256
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4257 for (var assembly_n = 0; assembly_n < assembliesNames.length; assembly_n++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4258 var assemblyName = assembliesNames[order[assembly_n]];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4259 if (assemblyName.length > 30) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4260 assemblyName =
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4261 '<span class="tooltip-link" rel="tooltip" title="' + assemblyName + '">' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4262 assemblyName.trunc(30) +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4263 '</span>'
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4264 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4265
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4266 table += '<td class="second_through_last_col_headers_td" position="' + order[assembly_n] + '">' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4267 '<span class="drag_handle"><span class="drag_image"></span></span>' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4268 '<span class="assembly_name">' + assemblyName + '</span>' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4269 '</td>';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4270 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4271
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4272 } else {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4273 table +=
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4274 '<tr class="group_header row_to_hide row_hidden group_empty" id="group_' + group_n + '">' +
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4275 '<td class="left_column_td"><span>' + groupName + '</span></td>'; //colspan="' + width + '"
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4276 for (var i = 1; i < width; i++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4277 table += '<td></td>';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4278 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4279 table += '</tr>';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4280 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4281
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4282 for (metric_n = 0; metric_n < metrics.length; metric_n++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4283 isExpandable = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4284 isPrimary = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4285 metricName = metrics[metric_n].metricName;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4286 subRows = getSubRows(subReports, groupName, metricName);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4287 if (subRows && subRows.length > 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4288 isExpandable = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4289 table += addRow(metrics[metric_n], mainMetrics, metricName, group_n, order, glossary, isExpandable, isPrimary);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4290 for (var rows_n = 0; rows_n < subRows.length; rows_n++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4291 isExpandable = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4292 isPrimary = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4293 table += addRow(subRows[rows_n], mainMetrics, subReferences[rows_n], group_n, order, glossary, isExpandable, isPrimary);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4294 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4295 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4296 else table += addRow(metrics[metric_n], mainMetrics, metricName, group_n, order, glossary, isExpandable, isPrimary);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4297 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4298 table += '</tr>';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4299 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4300 table += '</table>';
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4301
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4302 table += buildExtendedLinkClick();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4303
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4304 setUpHeatMap(table);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4305 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4306
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4307 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4308
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4309
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4310 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4311
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4312 function buildReport() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4313 var assembliesNames;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4314 var order;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4315
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4316 var totalReport = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4317 var qualities = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4318 var mainMetrics = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4319 var contigsLens = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4320 var coordNx = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4321 var contigsLensNx = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4322 var alignedContigsLens = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4323 var refLengths = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4324 var contigs = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4325 var featuresInContigs = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4326 var operonsInContigs = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4327 var gcInfos = null;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4328
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4329 var glossary = JSON.parse($('#glossary-json').html());
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4330
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4331 var plotsSwitchesDiv = document.getElementById('plots-switches');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4332 var toRemoveRefLabel = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4333 var firstPlot = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4334
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4335 /****************/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4336 /* Total report */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4337
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4338 if (!(totalReport = readJson('total-report'))) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4339 console.log("Error: cannot read #total-report-json");
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4340 return 1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4341 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4342
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4343 assembliesNames = totalReport.assembliesNames;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4344
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4345 order = recoverOrderFromCookies() \|\| totalReport.order \|\| Range(0, assembliesNames.length);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4346
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4347 buildTotalReport(assembliesNames, totalReport, order, glossary, qualities, mainMetrics);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4348
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4349 if (refLengths = readJson('reference-length'))
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4350 refLengths = refLengths.reflen;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4351
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4352 /****************/
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4353 /* Plots */
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4354
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4355 while (assembliesNames.length > colors.length) { // colors is defined in utils.js
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4356 colors = colors.concat(colors);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4357 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4358
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4359 $(plotsSwitchesDiv).html('<b>Plots:</b>');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4360
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4361 var selectedAssemblies = Array.apply(null, {length: assembliesNames}).map(Number.call, Number);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4362 assembliesNames.forEach(function(filename, i) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4363 addLabelToLegend(i, filename, selectedAssemblies, colors)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4364 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4365
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4366 var tickX = 1;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4367 if (tickX = readJson('tick-x'))
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4368 tickX = tickX.tickX;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4369
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4370 if (contigsLens = readJson('contigs-lengths')) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4371 makePlot(firstPlot, assembliesNames, order, 'cumulative', 'Cumulative length', cumulative.draw, contigsLens.lists_of_lengths, refLengths, tickX);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4372 firstPlot = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4373 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4374
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4375 if (coordNx = readJson('coord-nx')) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4376 makePlot(firstPlot, assembliesNames, order, 'nx', 'Nx', nx.draw, {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4377 coord_x: coordNx.coord_x,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4378 coord_y: coordNx.coord_y,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4379 filenames: coordNx.filenames
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4380 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4381 null, null
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4382 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4383 firstPlot = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4384 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4385
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4386 if (coordNx = readJson('coord-nax')) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4387 makePlot(firstPlot, assembliesNames, order, 'nax', 'NAx', nx.draw, {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4388 coord_x: coordNx.coord_x,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4389 coord_y: coordNx.coord_y,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4390 filenames: coordNx.filenames
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4391 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4392 null, null
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4393 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4394 firstPlot = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4395 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4396
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4397 if (coordNx = readJson('coord-ngx')) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4398 makePlot(firstPlot, assembliesNames, order, 'ngx', 'NGx', nx.draw, {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4399 coord_x: coordNx.coord_x,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4400 coord_y: coordNx.coord_y,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4401 filenames: coordNx.filenames
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4402 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4403 null, null
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4404 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4405 firstPlot = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4406 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4407
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4408 if (coordNx = readJson('coord-ngax')) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4409 makePlot(firstPlot, assembliesNames, order, 'ngax', 'NGAx', nx.draw, {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4410 coord_x: coordNx.coord_x,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4411 coord_y: coordNx.coord_y,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4412 filenames: coordNx.filenames
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4413 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4414 null, null
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4415 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4416 firstPlot = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4417 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4418
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4419 if (coordMisassemblies = readJson('coord-misassemblies')) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4420 makePlot(firstPlot, assembliesNames, order, 'misassemblies', 'Misassemblies', frc.draw, {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4421 coord_x: coordMisassemblies.coord_x,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4422 coord_y: coordMisassemblies.coord_y,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4423 filenames: coordMisassemblies.filenames
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4424 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4425 null, 1
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4426 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4427 firstPlot = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4428 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4429
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4430 featuresInContigs = readJson('features-in-contigs');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4431 operonsInContigs = readJson('operons-in-contigs');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4432 // if (genesInContigs \|\| operonsInContigs)
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4433 // contigs = readJson('contigs');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4434
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4435 if (featuresInContigs) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4436 makePlot(firstPlot, assembliesNames, order, 'features', 'Genomic features', gns.draw, {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4437 filesFeatureInContigs: featuresInContigs.features_in_contigs,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4438 kind: 'gene',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4439 filenames: featuresInContigs.filenames
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4440 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4441 featuresInContigs.ref_features_number, tickX
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4442 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4443 firstPlot = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4444 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4445 if (operonsInContigs) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4446 makePlot(firstPlot, assembliesNames, order, 'operons', 'Operons', gns.draw, {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4447 filesFeatureInContigs: operonsInContigs.operons_in_contigs,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4448 kind: 'operon',
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4449 filenames: operonsInContigs.filenames
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4450 },
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4451 operonsInContigs.ref_operons_number, tickX
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4452 );
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4453 firstPlot = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4454 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4455 gcInfos = readJson('gc');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4456 if (gcInfos && (gcInfos.lists_of_gc_info \|\| gcInfos.list_of_GC_distributions)) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4457 makePlot(firstPlot, assembliesNames, order, 'gc', 'GC content', gc.draw, gcInfos, gcInfos.reference_index);
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4458 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4459
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4460 var noReference = true;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4461 var report = totalReport.report;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4462 for (var group_n = 0; group_n < report.length; group_n++) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4463 var group = report[group_n];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4464 var groupName = group[0];
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4465 if (groupName == 'Reference statistics' && group[1].length > 0) {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4466 noReference = false;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4467 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4468 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4469 if (noReference) extendAll();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4470 appendIcarusLinks();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4471 return 0;
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4472 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4473
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4474 function extendAll() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4475 $('.row_to_hide').toggleClass('row_hidden');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4476
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4477 var link = $('#extended_report_link');
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4478 link.hide();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4479 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4480 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4481
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4482
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4483 <script type="text/javascript">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4484 $(function() {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4485
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4486 buildReport();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4487
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4488 dragTable.init();
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4489
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4490 $("[rel=tooltip]").tooltip({ animation: false, });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4491 });
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4492 </script>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4493 </head>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4494
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4495 <body>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4496 <div class="top-panel">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4497 <table class="layout-table">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4498 <tr>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4499 <td class='layout-table-td'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4500 <div class="page_title">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4501 <h1>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4502 QUAST
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4503 </h1>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4504 <p class="page_subtitle">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4505 <b>Quality Assessment Tool for Genome Assemblies</b>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4506 by <a href="http://cab.spbu.ru" class='dark_bg_link'>CAB</a>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4507 </p>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4508 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4509 </td>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4510 </tr>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4511 </table>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4512 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4513 <div class="content">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4514 <div id='header'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4515 <p id='report_date'></p>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4516
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4517 <p id='icarus'></p>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4518 <p id='extrainfo'>Loading...</p>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4519 <p id='per_ref_msg'></p>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4520 <p id='krona'></p>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4521
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4522 <p id="data_set_p">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4523 <span style="display: none;" id="reference_name">Aligned to
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4524 "<span class='val'></span>"
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4525 </span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4526
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4527 <span style="display: none;" id="combined_reference_name">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4528 Combined reference
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4529 </span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4530
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4531 <span style="display: none;" id="est_reference_length">Estimated reference size:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4532 <span class='val'></span><span class='rhs'> </span>bp
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4533 </span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4534
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4535 <span style="display: none;" id="reference_length">\|
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4536 <span class='val'></span><span class='rhs'> </span>bp
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4537 </span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4538
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4539 <span style="display: none;" id="combined_reference_files">\|
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4540 <span class='val'></span><span class='rhs'> </span>reference<span style="display: none;" class='plural_ending'>s</span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4541 </span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4542
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4543 <span style="display: none;" id="reference_fragments">\|
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4544 <span class='val'></span><span class='rhs'> </span>fragment<span style="display: none;" class='plural_ending'>s</span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4545 </span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4546
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4547 <span style="display: none;" id="reference_gc">\|
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4548 <span class='val'></span><span class='rhs'> </span>% G+C
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4549 </span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4550
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4551 <span style="display: none;" id="reference_chr">\|
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4552 <span class='val'></span> chromosome<span style="display: none;" class='plural_ending'>s</span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4553 </span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4554
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4555 <span style="display: none;" id="total_reads"><br>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4556 <span class='val'></span> reads
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4557 </span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4558
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4559 <span style="display: none;" id="reference_mapped_reads">\|
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4560 <span class='val'></span>% mapped
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4561 </span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4562
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4563 <span style="display: none;" id="reference_paired_reads">\|
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4564 <span class='val'></span>% properly paired
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4565 </span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4566
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4567 <span style="display: none;" id="reference_features"><br>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4568 <span class='val'></span> genomic features
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4569 </span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4570
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4571 <span style="display: none;" id="reference_operons">\|
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4572 <span class='val'></span> operons
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4573 </span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4574 </p>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4575 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4576
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4577 <noscript>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4578 <div style="margin-left: 0;">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4579 Unfortunately, <span style="font-weight: bold">JavaScript</span> in your
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4580 browser <span style="font-weight: bold">is disabled</span> or is not supported.</br>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4581 We need JavaScript to build report and plots.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4582 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4583 </noscript>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4584
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4585 <div class='report-and-plots'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4586 <div class='report' id='main_report'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4587 <div id="heatmap_header" style='display: none; float: left;'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4588 <div style="padding-right: 10px; display: inline-block; vertical-align:top;">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4589 <canvas id="gradientHeatmap" width="150" height="6"></canvas>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4590 <div style="margin-left: 0; text-align: justify;">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4591 <span class="heatmap_legend">Worst</span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4592 <span style="margin-left: -5px;" class="heatmap_legend">Median</span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4593 <span class="heatmap_legend">Best</span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4594 <span class="heatmap_legend" style='width: 100%; height: 0;'></span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4595 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4596 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4597 <label for="heatmaps_chbox"><input type="checkbox" checked="checked" id="heatmaps_chbox">Show heatmap</label>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4598 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4599 <div style="clear: both;"></div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4600 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4601 <div class='plots'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4602 <table style='margin: -3px;'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4603 <tr id='all-switches'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4604 <td>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4605 <div id='plots-switches'></div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4606 </td>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4607 <td style='text-align: right; padding-right: 22px;'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4608 <span id='scale-placeholder'></span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4609 </td>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4610 </tr>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4611 <tr>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4612 <td colspan="2">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4613 <div id='plot-placeholder' style=''></div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4614 </td>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4615 <td>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4616 <div id='legend-placeholder'></div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4617 </td>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4618 </tr>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4619 <tr>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4620 <td colspan="3" id="plot-caption" style="display: none;">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4621 <p id="contigs_are_ordered">Contigs are ordered from largest (contig #1) to smallest.</p>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4622 <p id="frc_info">FRCurve:
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4623 Y is the total number of aligned bases divided by the reference length,
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4624 in the contigs having the total number of <span class="frc_plot_name"></span> at most X.</p>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4625 <p id="gc_info">Contigs are broken into nonoverlapping 100 bp windows.
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4626 Plot shows number of windows for each GC percentage.</p>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4627 <p id="gc_contigs_info">Plot shows number of contigs with GC percentage in a certain range.</p>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4628 </td>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4629 </tr>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4630 </table>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4631 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4632
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4633 <p>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4634 <span id="main_ref_genome"></span>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4635 </p>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4636
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4637 <div style="clear: left"></div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4638 <div style="clear: right"></div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4639
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4640 <div class='json-code'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4641 <div id='total-report-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4642 {"date":"12 April 2023, Wednesday, 09:50:51","assembliesNames":["TEST"],"referenceName":"","order":[0],"report":[["Genome statistics",[{"metricName":"Complete BUSCO (%)","quality":"More is better","values":["0.00"],"isMain":true},{"metricName":"Partial BUSCO (%)","quality":"Less is better","values":["0.00"],"isMain":true}]],["Reads mapping",[]],["Misassemblies",[]],["Unaligned",[]],["Mismatches",[{"metricName":"# N's per 100 kbp","quality":"Less is better","values":["0.00"],"isMain":true},{"metricName":"# N's","quality":"Less is better","values":[0],"isMain":false}]],["Statistics without reference",[{"metricName":"# contigs","quality":"Equal","values":[62],"isMain":true},{"metricName":"# contigs (>= 0 bp)","quality":"Equal","values":[100],"isMain":false},{"metricName":"# contigs (>= 1000 bp)","quality":"Equal","values":[58],"isMain":false},{"metricName":"# contigs (>= 5000 bp)","quality":"Equal","values":[48],"isMain":false},{"metricName":"# contigs (>= 10000 bp)","quality":"Equal","values":[41],"isMain":false},{"metricName":"# contigs (>= 25000 bp)","quality":"Equal","values":[28],"isMain":false},{"metricName":"# contigs (>= 50000 bp)","quality":"Equal","values":[20],"isMain":false},{"metricName":"Largest contig","quality":"More is better","values":[436224],"isMain":true},{"metricName":"Total length","quality":"More is better","values":[3017519],"isMain":true},{"metricName":"Total length (>= 0 bp)","quality":"More is better","values":[3027634],"isMain":false},{"metricName":"Total length (>= 1000 bp)","quality":"More is better","values":[3015201],"isMain":true},{"metricName":"Total length (>= 5000 bp)","quality":"More is better","values":[2996428],"isMain":false},{"metricName":"Total length (>= 10000 bp)","quality":"More is better","values":[2944723],"isMain":true},{"metricName":"Total length (>= 25000 bp)","quality":"More is better","values":[2735277],"isMain":false},{"metricName":"Total length (>= 50000 bp)","quality":"More is better","values":[2421445],"isMain":true},{"metricName":"N50","quality":"More is better","values":[99915],"isMain":false},{"metricName":"N90","quality":"More is better","values":[27780],"isMain":false},{"metricName":"auN","quality":"More is better","values":["154096.4"],"isMain":false},{"metricName":"L50","quality":"Less is better","values":[8],"isMain":false},{"metricName":"L90","quality":"Less is better","values":[28],"isMain":false},{"metricName":"GC (%)","quality":"Equal","values":["37.31"],"isMain":false}]],["K-mer-based statistics",[]],["Predicted genes",[]],["Similarity statistics",[]],["Reference statistics",[]]],"subreferences":[],"subreports":[],"minContig":500}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4643 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4644 <div id='qualities-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4645 {{ qualities }}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4646 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4647 <div id='main-metrics-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4648 {{ mainMetrics }}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4649 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4650
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4651 <div id="contigs-lengths-json">
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4652 {"filenames":["TEST"],"lists_of_lengths":[[436224,252900,206370,168397,132811,115359,113419,99915,97190,92075,86662,82418,81741,81694,71911,66886,64537,62649,55461,52826,48115,47790,45935,44497,35306,35051,29358,27780,24296,23952,18776,17346,16026,15602,15587,15306,13750,13168,12357,12074,11206,9892,8939,7812,6929,6828,5969,5336,3276,2262,2083,1817,1775,1642,1578,1526,1515,1299,652,607,534,525]]}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4653 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4654 <div id='assemblies-lengths-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4655 {{ assembliesLengths }}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4656 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4657 <div id='reference-length-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4658 {{ referenceLength }}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4659 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4660 <div id='tick-x-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4661 {"tickX":1}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4662 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4663 <div id='coord-nx-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4664 {"coord_x":[[0.0,1e-10,14.45637956215023,14.45637956225023,22.8374369805128,22.837436980612797,29.676499137205102,29.6764991373051,35.25714336844275,35.25714336854275,39.65847439568732,39.65847439578732,43.48144949542986,43.48144949552986,47.24013336784292,47.240133367942924,50.55129727435022,50.55129727445022,53.772155204325145,53.77215520442515,56.82350301688241,56.823503016982414,59.6954650492673,59.6954650493673,62.426781736916986,62.42678173701699,65.13566277461716,65.13566277471716,67.84298624134595,67.84298624144596,70.22610296737155,70.22610296747155,72.44269215869063,72.44269215879063,74.58143594124843,74.58143594134843,76.65761176648763,76.65761176658764,78.49557865252878,78.49557865262878,80.24622214474871,80.24622214484872,81.84074400194332,81.84074400204332,83.42449542156984,83.42449542166985,84.94677249753855,84.94677249763855,86.42139452974448,86.42139452984448,87.59142858752504,87.59142858762505,88.75301199429067,88.75301199439068,89.72593047467142,89.72593047477142,90.64655433818312,90.64655433828312,91.451719110965,91.451719111065,92.24548378982867,92.24548378992867,92.86771682299266,92.86771682309266,93.4425599308571,93.4425599309571,93.97365849229118,93.97365849239118,94.4907057751749,94.4907057752749,95.0072559609401,95.0072559610401,95.5144938606849,95.5144938607849,95.97016621933449,95.97016621943449,96.40655120978526,96.40655120988527,96.81605981602767,96.81605981612768,97.21618985663387,97.21618985673388,97.58755454398133,97.58755454408133,97.91537352374583,97.91537352384583,98.21161026657992,98.21161026667993,98.4704984459087,98.4704984460087,98.7001241748602,98.70012417496021,98.92640278321363,98.92640278331363,99.12421429657941,99.12421429667941,99.30104831154335,99.30104831164336,99.40961432222961,99.40961432232962,99.48457656770347,99.48457656780347,99.5536067875629,99.5536067876629,99.61382181852045,99.61382181862045,99.67264497754613,99.67264497764613,99.72706054212087,99.72706054222087,99.77935515898989,99.77935515908989,99.82992650584802,99.82992650594802,99.88013331481923,99.88013331491923,99.92318192528366,99.92318192538366,99.94478908003562,99.94478908013562,99.964904943432,99.964904943532,99.98260160085157,99.98260160095157,100.0,100.0000000001]],"coord_y":[[436224,436224,436224,252900,252900,206370,206370,168397,168397,132811,132811,115359,115359,113419,113419,99915,99915,97190,97190,92075,92075,86662,86662,82418,82418,81741,81741,81694,81694,71911,71911,66886,66886,64537,64537,62649,62649,55461,55461,52826,52826,48115,48115,47790,47790,45935,45935,44497,44497,35306,35306,35051,35051,29358,29358,27780,27780,24296,24296,23952,23952,18776,18776,17346,17346,16026,16026,15602,15602,15587,15587,15306,15306,13750,13750,13168,13168,12357,12357,12074,12074,11206,11206,9892,9892,8939,8939,7812,7812,6929,6929,6828,6828,5969,5969,5336,5336,3276,3276,2262,2262,2083,2083,1817,1817,1775,1775,1642,1642,1578,1578,1526,1526,1515,1515,1299,1299,652,652,607,607,534,534,525,525,0.0]],"filenames":["TEST"]}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4665 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4666 <div id='coord-ngx-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4667 {{ coordNGx }}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4668 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4669 <div id='coord-nax-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4670 {{ coordNAx }}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4671 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4672 <div id='coord-ngax-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4673 {{ coordNGAx }}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4674 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4675 <div id='coord-misassemblies-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4676 {{ coordmisassemblies }}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4677 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4678 <div id='features-in-contigs-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4679 {{ featuresInContigs }}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4680 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4681 <div id='operons-in-contigs-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4682 {{ operonsInContigs }}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4683 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4684 <div id='summary-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4685 [{{ num_contigs }},
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4686 {{ Largest_alignment }},
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4687 {{ Total_aligned_length }},
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4688 {{ num_misassemblies }},
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4689 {{ Misassembled_contigs_length }},
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4690 {{ num_mismatches_per_100_kbp }},
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4691 {{ num_indels_per_100_kbp }},
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4692 {{ num_N's_per_100_kbp }},
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4693 {{ Genome_fraction }},
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4694 {{ Duplication_ratio }},
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4695 {{ NGA50 }}]
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4696 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4697 <div id='misassemblies-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4698 {{ allMisassemblies }}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4699 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4700 <div id='krona-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4701 {{ krona }}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4702 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4703 <div id='gc-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4704 {"filenames":["TEST"],"reference_index":null,"list_of_GC_distributions":[[[0.0,1.0,2.0,3.0,4.0,5.0,6.0,7.0,8.0,9.0,10.0,11.0,12.0,13.0,14.0,15.0,16.0,17.0,18.0,19.0,20.0,21.0,22.0,23.0,24.0,25.0,26.0,27.0,28.0,29.0,30.0,31.0,32.0,33.0,34.0,35.0,36.0,37.0,38.0,39.0,40.0,41.0,42.0,43.0,44.0,45.0,46.0,47.0,48.0,49.0,50.0,51.0,52.0,53.0,54.0,55.0,56.0,57.0,58.0,59.0,60.0,61.0,62.0,63.0,64.0,65.0,66.0,67.0,68.0,69.0,70.0,71.0,72.0,73.0,74.0,75.0,76.0,77.0,78.0,79.0,80.0,81.0,82.0,83.0,84.0,85.0,86.0,87.0,88.0,89.0,90.0,91.0,92.0,93.0,94.0,95.0,96.0,97.0,98.0,99.0,100.0],[0,0,0,0,0,0,0,0,1,0,0,1,2,1,1,8,9,12,23,35,61,95,116,157,220,277,347,457,580,713,942,1109,1276,1469,1593,1822,1890,1935,1942,1965,1885,1759,1570,1320,1103,862,701,537,433,295,196,142,95,82,45,30,22,15,10,6,5,1,2,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]]],"list_of_GC_contigs_distributions":[[[0,5,10,15,20,25,30,35,40,45,50,55,60,65,70,75,80,85,90,95,100],[0,0,0,0,0,1,12,44,2,1,2,0,0,0,0,0,0,0,0,0,0]]],"lists_of_gc_info":null}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4705 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4706 <div id='icarus-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4707 {"links":["icarus_viewers/contig_size_viewer.html"],"links_names":["View in Icarus contig browser"]}
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4708 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4709 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4710 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4711
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4712 <div class='json-code'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4713 <div id='glossary-json'>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4714 {
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4715 "# contigs" : "<span>is the total number of contigs in the assembly.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4716 "Largest contig" : "<span>is the length of the longest contig in the assembly.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4717 "Total length" : "<span>is the total number of bases in the assembly.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4718 "Reference length" : "<span>is the total number of bases in the reference.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4719
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4720 "# contigs (>= 0 bp)" : "<span>is the total number of contigs in the assembly that have size greater than or equal to 0 bp.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4721 "Total length (>= 0 bp)" : "<span>is the total number of bases in the contigs having size greater than or equal to 0 bp.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4722
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4723 "N50" : "<span>is the contig length such that using longer or equal length contigs produces half (50%) of the bases of the assembly. Usually there is no value that produces exactly 50%, so the technical definition is the maximum length x such that using contigs of length at least x accounts for at least 50% of the total assembly length. Similarly, Nx for any x between 0 and 100 could be computed (x% of assembly).</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4724 "NG50" : "<span>is the contig length such that using longer or equal length contigs produces half (50%) of the bases of the reference genome. This metric is computed only if a reference genome is provided. Similarly, NGx for any x between 0 and 100 could be computed (x% of the reference).</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4725
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4726 "L50" : "<span>is the minimum number of contigs that produce half (50%) of the bases of the assembly. In other words, it's the number of contigs of length at least N50. Similarly, Lx for any x between 0 and 100 could be computed.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4727 "LG50" : "<span>is the minimum number of contigs that produce half (50%) of the bases of the reference genome. In other words, it's the number of contigs of length at least NG50. This metric is computed only if a reference genome is provided. Similarly, LGx for any x between 0 and 100 could be computed.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4728
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4729 "NA50" : "<span>is N50 where the lengths of aligned blocks are counted instead of contig lengths. I.e., if a contig has a misassembly with respect to the reference, the contig is broken into smaller pieces. This metric is computed only if a reference genome is provided. Similarly, NAx for any x between 0 and 100 could be computed.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4730 "NGA50" : "<span>is NG50 where the lengths of aligned blocks are counted instead of contig lengths. I.e., if a contig has a misassembly with respect to the reference, the contig is broken into smaller pieces. This metric is computed only if a reference genome is provided. Similarly, NGAx for any x between 0 and 100 could be computed.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4731
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4732 "LA50" : "<span>is L50 where aligned blocks are counted instead of contigs. I.e., if a contig has a misassembly with respect to the reference, the contig is broken into smaller pieces. Similarly, LAx for any x between 0 and 100 could be computed.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4733 "LGA50" : "<span>is LG50 where aligned blocks are counted instead of contigs. I.e., if a contig has a misassembly with respect to the reference, the contig is broken into smaller pieces. Similarly, LGAx for any x between 0 and 100 could be computed.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4734
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4735 "auN" : "<span>is the area under the Nx curve.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4736 "auNG" : "<span>is the area under the NGx curve.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4737 "auNA" : "<span>is the area under the NAx curve.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4738 "auNGA" : "<span>is the area under the NGAx curve.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4739
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4740 "Average %IDY" : "<span>is the average of alignment identity percent (alignment accuracy) among all contigs.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4741 "# misassemblies" : "<span>is the number of positions in the assembled contigs where the left flanking sequence aligns over 1 kbp away from the right flanking sequence on the reference (<i>relocation</i>) or they overlap on more than 1 kbp (<i>relocation</i>) or flanking sequences align on different strands (<i>inversion</i>) or different chromosomes (<i>translocation</i>).</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4742 "# large block misassemblies" : "<span>is the number of misassemblies between alignments with length greater than or equal to 3 kbp and with the misassembly threshold equal to 5 kbp (instead of default 1 kbp for regular misassemblies).</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4743 "# misassembled contigs" : "<span>is the number of contigs that contain misassembly events.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4744 "Misassembled contigs length" : "<span>is the number of total bases contained in all contigs that have one or more misassemblies.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4745
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4746 "# relocations" : "<span>is the number of relocation events among all misassembly events. Relocation is a misassembly where the left flanking sequence aligns over 1 kbp away from the right flanking sequence on the reference, or they overlap by more than 1 kbp and both flanking sequences align on the same chromosome.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4747 "# translocations" : "<span>is the number of translocation events among all misassembly events. Translocation is a misassembly where the flanking sequences align on different chromosomes.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4748 "# interspecies translocations" : "<span>is the number of interspecies translocation events among all misassembly events. Interspecies translocation is a misassembly where the flanking sequences align on different references (based on alignments to the combined reference).</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4749 "# inversions" : "<span>is the number of inversion events among all misassembly events. Inversion is a misassembly where it is not a <i>relocation</i> and the flanking sequences align on opposite strands of the same chromosome.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4750 "# large relocations" : "<span>is the number of relocation events among all large block misassemblies. Relocation is a misassembly where the left flanking sequence aligns over 5 kbp away from the right flanking sequence on the reference, or they overlap by more than 5 kbp and both flanking sequences align on the same chromosome.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4751 "# large translocations" : "<span>is the number of translocation events among all large block misassemblies. Translocation is a misassembly where the flanking sequences align on different chromosomes.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4752 "# large i/s translocations" : "<span>is the number of interspecies translocation events among all large block misassemblies. Interspecies translocation is a misassembly where the flanking sequences align on different references (based on alignments to the combined reference).</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4753 "# large inversions" : "<span>is the number of inversion events among all large block misassemblies. Inversion is a misassembly where it is not a <i>relocation</i> and the flanking sequences align on opposite strands of the same chromosome.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4754 "# local misassemblies" : "<span>is the number of local misassemblies. We define a local misassembly breakpoint as a breakpoint that satisfies these conditions: <ol> <li>Two or more distinct alignments cover the breakpoint.</li> <li>The gap between left and right flanking sequences is less than the misassembly threshold (1 kbp by default).</li> <li>The left and right flanking sequences both are on the same strand of the same chromosome of the reference genome.</li> </ol> </span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4755 "# scaffold gap ext. mis." : "<span>is the number of scaffold gap size extensive misassemblies. We define a scaffold gap size misassembly as a breakpoint where the flanking sequences are combined in a scaffold on the wrong distance. These misassemblies are not included in the total number of misassemblies. </span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4756 "# scaffold gap loc. mis." : "<span>is the number of scaffold gap size local misassemblies. Such breakpoints satisfy the local misassembly conditions but they occur inside scaffolds. These misassemblies are not included in the total number of local misassemblies. </span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4757 "# possibly misassembled contigs": "<span>is the number of contigs that contain large unaligned fragment (default min length is 500 bp) and thus could possibly contain interspecies translocation with unknown reference.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4758 "# possible misassemblies" : "<span>is the number of putative interspecies translocations in possibly misassembled contigs if each large unaligned fragment is supposed to be a fragment of unknown reference.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4759 "# intergenomic misassemblies" : "<span>is the number of all found and putative (possible) interspecies translocations.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4760 "# structural variations" : "<span>is the number of misassemblies matched with structural variations.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4761 "# possible TEs" : "<span>is the number of misassemblies possibly caused by transposable elements (TEs). We define a possible TE as an event that satisfies these conditions: <ol> <li>There are two misassembly breakpoints of the same type around a short alignment (less than 7 kbp by default)</li> <li>The gap between two long flanking sequences on the sides of the short alignment is less than 7 kbp.</li> <li> The long flanking sequences both are on the same strand of the same chromosome of the reference genome.</li> </ol> </span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4762 "# unaligned mis. contigs" : "<span>is the number of contigs that have the number of unaligned bases more than 50% of the contig length and a misassembly event in their aligned fragment. Note that such misassemblies are not counted in <i># misassemblies</i> and other <i>misassemblies</i> statistics.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4763
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4764 "# fully unaligned contigs" : "<span>is the number of contigs that have no alignment to the reference sequence.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4765 "Fully unaligned length" : "<span>is the total number of bases contained in all fully unaligned contigs. Uncalled bases (N's) are not counted.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4766 "# partially unaligned contigs" : "<span>is the number of contigs that have at least one alignment to the reference sequence but also have at least one unaligned fragment of length ≥ <i>unaligned-part-size threshold</i> (uncalled bases (N's) are not counted towards the fragment length).</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4767 "Partially unaligned length" : "<span>is the total number of unaligned bases in all partially unaligned contigs. Uncalled bases (N's) are not counted.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4768
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4769 "# ambiguous contigs" : "<span>is the number of contigs that have reference alignments of equal quality in multiple locations on the reference.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4770 "Ambiguous contigs length" : "<span>is the total number of bases contained in all ambiguous contigs.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4771
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4772 "Genome fraction (%)" : "<span>is the total number of aligned bases in the reference, divided by the genome size. A base in the reference genome is counted as aligned if there is at least one contig with at least one alignment to this base. Contigs from repeat regions may map to multiple places, and thus may be counted multiple times in this quantity.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4773 "GC (%)" : "<span>is the total number of G and C nucleotides in the assembly, divided by the total length of the assembly.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4774 "Reference GC (%)" : "<span>is the total number of G and C nucleotides in the reference, divided by the total length of the reference.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4775
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4776 "# mismatches per 100 kbp" : "<span>is the average number of mismatches per 100,000 aligned bases in the assembly.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4777 "# mismatches" : "<span>is the number of mismatches in all aligned bases in the assembly.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4778 "# indels per 100 kbp" : "<span>is the average number of indels per 100,000 aligned bases in the assembly.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4779 "# indels" : "<span>is the number of indels in all aligned bases in the assembly.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4780 "# indels (<= 5 bp)" : "<span>is the number of indels of length less than or equal to 5 bp.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4781 "# indels (> 5 bp)" : "<span>is the number of indels of length greater than 5 bp.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4782 "Indels length" : "<span>is the number of total bases contained in all indels.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4783
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4784 "# genomic features" : "<span>is the number of genomic features (genes, transcripts, CDS) in the assembly (complete and partial), based on a user-provided annotated list of gene positions in the reference genome. A feature counts as 'partially covered' if the assembly contains at least 100 bp of this feature but not the whole feature.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4785 "# operons" : "<span>is the number of operons in the assembly (complete and partial), based on a user-provided annotated list of operon positions in the reference genome. An operon counts as 'partially covered' if the assembly contains at least 100 bp of this operon but not the whole operon.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4786 "# predicted genes (unique)" : "<span>is the number of unique genes in the assembly found by a gene prediction tool.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4787 "# predicted genes (>= 0 bp)" : "<span>is the number of found genes having length greater than or equal to 0 bp.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4788
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4789 "Complete BUSCO (%)" : "<span>is the percent of BUSCO (Universal Single-Copy Ortholog) genes found in the assembly in a complete form.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4790 "Partial BUSCO (%)" : "<span>is the percent of BUSCO (Universal Single-Copy Ortholog) genes found in the assembly in a partial form.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4791
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4792 "Cumulative length" : "<span>plot shows the growth of assembly contig lengths. On the x-axis, contigs are ordered from largest (contig #1) to smallest. The y-axis gives the size of the x largest contigs in the assembly.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4793 "Nx" : "<span>plot shows the Nx metric value as x varies from 0 to 100.</span> <span>Nx is the minimum contig length <b>y</b> such that using contigs of length at least <b>y</b> accounts for at least x% of the total assembly length.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4794 "NGx" : "<span>plot shows the NGx metric value as x varies from 0 to 100.</span> <span>NGx is the minimum contig length <b>y</b> such that using contigs of length at least <b>y</b> accounts for at least x% of the bases of the reference genome. This metric is computed only if a reference genome is provided.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4795 "NAx" : "<span>plot shows the NAx metric value as x varies from 0 to 100.</span> <span>NAx is computed similarly to Nx, but based on lengths of aligned blocks instead of contig lengths. Contigs are broken into aligned blocks at misassembly breakpoints. NAx is the minimum block length <b>y</b> such that using blocks of length at least <b>y</b> accounts for at least x% of the bases of the assembly. This metric is computed only if a reference genome is provided.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4796 "NGAx" : "<span>plot shows the NGAx metric value as x varies from 0 to 100.</span><span>NGAx is computed similarly to NGx, but based on lengths of aligned blocks instead of contig lengths. Contigs are broken at misassembly breakpoints. NGAx is the minimum block length <b>y</b> such that using blocks of length at least <b>y</b> accounts for at least x% of the bases of the reference genome. This metric is computed only if a reference genome is provided.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4797 "GC content" : "<span>plot shows the distribution of GC percentage among the contigs, i.e., the total number of bases in contigs with such GC content. Typically, the distribution is approximately Gaussian. However, for some genomes it is not Gaussian. For assembly projects with contaminants, the GC distribution of the contaminants often differs from the reference genome and may give a superposition of multiple curves with different peaks.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4798
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4799 "Duplication ratio" : "<span>is the total number of aligned bases in the assembly, divided by the total number of aligned bases in the reference (see the <b>Genome fraction (%)</b> metric). If the assembly contains many contigs that cover the same regions of the reference, its <i>Duplication ratio</i> may be much larger than 1. This may occur due to overestimating repeat multiplicities and due to small overlaps between contigs, among other reasons.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4800 "Largest alignment" : "<span>is the length of the largest continuous alignment in the assembly. This metric is always equal to the <i>Largest contig</i> metric but it can be smaller if the largest contig of the assembly contains a misassembly event.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4801 "Total aligned length" : "<span>is the total number of aligned bases in the assembly.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4802 "Avg contig read support" : "<span>is the average coverage of contigs that have large unique alignments to the reference. Read coverage is extracted from contig names (SPAdes/Velvet naming scheme only).</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4803
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4804 "# N's" : "<span>is the total number of uncalled bases (N's) in the assembly.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4805 "# N's per 100 kbp" : "<span>is the average number of uncalled bases (N's) per 100,000 assembly bases.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4806
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4807 "# mapped" : "<span>is the number of reads that mapped to the assembly.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4808 "Mapped (%)" : "<span>is the percent of reads that mapped to the assembly.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4809 "# properly paired" : "<span>is the number of reads that mapped within expected range and orientation of each other to the assembly.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4810 "Properly paired (%)" : "<span>is the percent of reads that mapped within expected range and orientation of each other to the assembly.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4811 "# singletons" : "<span>is the number of reads which do not overlap any other reads.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4812 "Singletons (%)" : "<span>is the percent of reads which do not overlap any other reads.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4813 "# misjoint mates" : "<span>is the number of reads with mate mapped to a different contig.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4814 "Misjoint mates (%)" : "<span>is the percent of reads with mate mapped to a different contig.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4815 "Avg. coverage depth" : "<span>is the average depth of coverage.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4816 "Coverage >= 1x (%)" : "<span>is the total number of bases with at least 1x coverage, divided by the total length of the assembly.</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4817
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4818 "# similar correct contigs" : "<span>is the number of correct contigs similar among > 50% assemblies (see Icarus for visualization).</span>",
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4819 "# similar misassembled blocks" : "<span>is the number of misassembled blocks similar among > 50% assemblies (see Icarus for visualization).</span>"
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4820 }
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4821
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4822 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4823 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4824 </div>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4825 </body>
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty ifb-elixirfr parents: diff changeset	4826 </html>

Mercurial > repos > ifb-elixirfr > abromics_extractor_summarize

annotate test-data/quast/quast_report.html @ 8:ce112a6105fa draft