Mercurial > repos > ifb-elixirfr > abromics_extractor_summarize

annotate test-data/integronfinder2/results.integrons @ 4:e3463c64863b draft

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planemo upload for repository https://gitlab.com/ifb-elixirfr/abromics/galaxy-tools commit 6afa8c416e3616d50952b8d3deab90e55580c787-dirty
author ifb-elixirfr
date Fri, 06 Oct 2023 13:39:56 +0000
parents eb95c9ca5c60
children
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eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
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1 # cmd: integron_finder --cpu 4 --local-max --eagle-eyes --promoter-attI --pdf --gbk --keep-tmp --outdir /storage/scratch/piemari/60579123/integronfinder/integronfinder_10_Enterococcus_faecalis_S17_L001 /storage/scratch/piemari/60579123/integronfinder/10_Enterococcus_faecalis_S17_L001.fasta
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
ifb-elixirfr
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2 ID_integron ID_replicon element pos_beg pos_end strand evalue type_elt annotation model type default distance_2attC considered_topology
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
ifb-elixirfr
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3 integron_01 contig00017 contig00017_42 41235 41546 -1 NA protein protein NA CALIN No NA lin
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
ifb-elixirfr
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diff changeset
4 integron_01 contig00017 contig00017_43 41543 42391 -1 NA protein protein NA CALIN No NA lin
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
ifb-elixirfr
parents:
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5 integron_01 contig00017 attc_001 41600 41701 -1 0.15 attC attC attc_4 CALIN No NA lin
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
ifb-elixirfr
parents:
diff changeset
6 integron_01 contig00017 contig00017_44 42419 43705 -1 NA protein protein NA CALIN No NA lin
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
ifb-elixirfr
parents:
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7 integron_01 contig00017 contig00017_45 43702 45213 -1 NA protein protein NA CALIN No NA lin
eb95c9ca5c60 planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
ifb-elixirfr
parents:
diff changeset
8 integron_01 contig00017 attc_002 44054 44100 -1 0.095 attC attC attc_4 CALIN No 2353.0 lin