Mercurial > repos > ifb-elixirfr > abromics_extractor_summarize
comparison abromics_galaxy_json_extractor_summarize.xml @ 4:e3463c64863b draft
planemo upload for repository https://gitlab.com/ifb-elixirfr/abromics/galaxy-tools commit 6afa8c416e3616d50952b8d3deab90e55580c787-dirty
| author | ifb-elixirfr |
|---|---|
| date | Fri, 06 Oct 2023 13:39:56 +0000 |
| parents | eb95c9ca5c60 |
| children |
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| 3:bb11fe588e5d | 4:e3463c64863b |
|---|---|
| 6 <import>macro.xml</import> | 6 <import>macro.xml</import> |
| 7 </macros> | 7 </macros> |
| 8 <expand macro='edam'/> | 8 <expand macro='edam'/> |
| 9 <expand macro="requirements"/> | 9 <expand macro="requirements"/> |
| 10 <expand macro="version_command"/> | 10 <expand macro="version_command"/> |
| 11 <command detect_errors="aggressive"><![CDATA[ | 11 <command detect_errors="aggressive"><![CDATA[ |
| 12 abromics_extract --version && | |
| 12 mkdir -p input_files && | 13 mkdir -p input_files && |
| 13 #for $file in $summarize_data | 14 #for $file in $summarize_data |
| 14 cp $file input_files && | 15 cp $file input_files && |
| 15 #end for | 16 #end for |
| 16 abromics_extract summarize input_files/* -o abromics_summary.json | 17 abromics_extract summarize input_files/* -o abromics_summary.json |