Mercurial > repos > ifb-elixirfr > abromics_galaxy_json_extractor
comparison abromics_galaxy_json_extractor.xml @ 2:857426567aca draft
planemo upload for repository https://gitlab.com/ifb-elixirfr/abromics/galaxy-tools/-/tree/galaxy_dev/abromics_galaxy_json_extractor?ref_type=heads commit b50ef5acc02354fb68dd0e57b371b35156daa0c9
| author | ifb-elixirfr |
|---|---|
| date | Wed, 30 Aug 2023 12:53:46 +0000 |
| parents | b77b0b1e6c74 |
| children | 1861b7f49aed |
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| 1:ab0dd8dbbacb | 2:857426567aca |
|---|---|
| 222 <param argument="--annotation_genbank_path" type="data" format="txt" multiple="false" optional="true" label="Bakta genbank file" help="Genbank annotation file"/> | 222 <param argument="--annotation_genbank_path" type="data" format="txt" multiple="false" optional="true" label="Bakta genbank file" help="Genbank annotation file"/> |
| 223 <param argument="--annotation_embl_path" type="data" format="txt" multiple="false" optional="true" label="Bakta embl file" help="EMBL annotation file"/> | 223 <param argument="--annotation_embl_path" type="data" format="txt" multiple="false" optional="true" label="Bakta embl file" help="EMBL annotation file"/> |
| 224 <param argument="--contig_sequences_path" type="data" format="fasta" multiple="false" optional="true" label="Contig sequences" help="Contig sequences files"/> | 224 <param argument="--contig_sequences_path" type="data" format="fasta" multiple="false" optional="true" label="Contig sequences" help="Contig sequences files"/> |
| 225 <param argument="--hypothetical_protein_path" type="data" format="fasta" multiple="false" optional="true" label="Hypothetical protein" help="Hypothetical protein fasta file"/> | 225 <param argument="--hypothetical_protein_path" type="data" format="fasta" multiple="false" optional="true" label="Hypothetical protein" help="Hypothetical protein fasta file"/> |
| 226 <param argument="--hypothetical_tabular_path" type="data" format="tabular" multiple="false" optional="true" label="Hypothetical annotation" help="Hypothetical protein annotation"/> | 226 <param argument="--hypothetical_tabular_path" type="data" format="tabular" multiple="false" optional="true" label="Hypothetical annotation" help="Hypothetical protein annotation"/> |
| 227 <param argument="--plot_file_path" type="data" format="svg" multiple="false" optional="true" label="Contig sequences" help="Contig sequences files"/> | 227 <param argument="--plot_file_path" type="data" format="svg" multiple="false" optional="true" label="Plot file" help="Plot of the annotation in svg format"/> |
| 228 <param argument="--summary_result_path" type="data" format="txt" multiple="false" optional="true" label="Bakta summary file" help="Summary file from bakta output"/> | 228 <param argument="--summary_result_path" type="data" format="txt" multiple="false" optional="true" label="Bakta summary file" help="Summary file from bakta output"/> |
| 229 <param argument="--nucleotide_annotation_path" type="data" format="fasta" multiple="false" optional="true" label="Bakta nucleotide annotation" help="Nucleotide sequence annotation file"/> | 229 <param argument="--nucleotide_annotation_path" type="data" format="fasta" multiple="false" optional="true" label="Bakta nucleotide annotation" help="Nucleotide sequence annotation file"/> |
| 230 <param argument="--amino_acid_annotation_path" type="data" format="fasta" multiple="false" optional="true" label="Bakta protein annotation" help="Amino acid sequence annotation file"/> | 230 <param argument="--amino_acid_annotation_path" type="data" format="fasta" multiple="false" optional="true" label="Bakta protein annotation" help="Amino acid sequence annotation file"/> |
| 231 <param argument="--gff_file_path" type="data" format="gff3" multiple="false" optional="true" label="Bakta annotation file" help="Annotation file"/> | 231 <param argument="--gff_file_path" type="data" format="gff3" multiple="false" optional="true" label="Bakta annotation file" help="Annotation file in gff"/> |
| 232 <expand macro="analysis_software_version"/> | 232 <expand macro="analysis_software_version"/> |
| 233 <expand macro="reference_database_version"/> | 233 <expand macro="reference_database_version"/> |
| 234 </when> | 234 </when> |
| 235 <when value="bandage"> | 235 <when value="bandage"> |
| 236 <param name="input" type="data" format="txt,tabular" multiple="false" label="Bandage report file" help="Tabular file from bandage output"/> | 236 <param name="input" type="data" format="txt,tabular" multiple="false" label="Bandage report file" help="Tabular file from bandage output"/> |