Mercurial > repos > ifb-elixirfr > abromics_galaxy_json_extractor
comparison test-data/plasmidfinder/genome_hit.fasta @ 0:b77b0b1e6c74 draft
planemo upload commit fd67555ae5bcff6d9052259771f805c4cd8124d3-dirty
| author | ifb-elixirfr |
|---|---|
| date | Mon, 24 Jul 2023 14:58:43 +0000 |
| parents | |
| children |
comparison
equal
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| -1:000000000000 | 0:b77b0b1e6c74 |
|---|---|
| 1 >repUS12:WARNING ID:100.0% COV:88.01% Best_match:contig00051 len=2083 cov=17.5 corr=0 origname=NODE_51_length_2083_cov_17.526074_pilon sw=shovill-spades/1.1.0 date=20230213:127..897:repUS12_2_repB(SAP014A)_GQ900379:88.013699 | |
| 2 ATGTGTCCTAATAGTAGCATTTATTCAGATGAAAAATCAAGGGTTTTAGTGGACAAGACA | |
| 3 AAAAGTGGAAAAGTGAGACCATGGAGAGAAAAGAAAATCGCTAATGTTGATTACTTTGAA | |
| 4 CTTCTGCATATTCTTGAATTTAAAAAGGCTGAAAGAGTAAAAGATTGTGCTGAAATATTA | |
| 5 GAGTATAAACAAAATCGTGAAACAGGCGAAAGAAAGTTGTATCGAGTGTGGTTTTGTAAA | |
| 6 TCCAGGCTTTGTCCAATGTGCAACTGGAGGAGAGCAATGAAACATGGCATTCAGTCACAA | |
| 7 AAGGTTGTTGCTGAAGTTATTAAACAAAAGCCAACAGTTCGTTGGTTGTTTCTCACATTA | |
| 8 ACAGTTAAAAATGTTTATGATGGCGAAGAATTAAATAAGAGTTTGTCAGATATGGCTCAA | |
| 9 GGATTTCGCCGAATGATGCAATATAAAAAAATTAATAAAAATCTTGTTGGTTTTATGCGT | |
| 10 GCAACGGAAGTGACAATAAATAATAAAGATAATTCTTATAATCAGCACATGCATGTATTG | |
| 11 GTATGTGTGGAACCAACTTATTTTAAGAATACAGAAAACTACGTGAATCAAAAACAATGG | |
| 12 ATTCAATTTTGGAAAAAGGCAATGAAATTAGACTATGATCCAAATGTAAAAGTTCAAATG | |
| 13 ATTCGACCGAAAAATAAATATAAATCGGATATACAATCGGCAATTGACGAAACTGCAAAA | |
| 14 TATCCTGTAAAGGATACGGATTTTATGACCGATGATGAAGAAAAGAATTTGGGTTCTGTT | |
| 15 GCAAAGTTTTAAATAAAGAATAAAATCCCTTACGGTATCTATGATTTAAGCTGGGATTCC | |
| 16 CAATAATACCTTGATTTCAGTACAGACCGAAAACCC | |
| 17 >repUS40:WARNING ID:100.0% COV:100.0% Best_match:contig00026 len=35051 cov=66.2 corr=0 origname=NODE_26_length_35051_cov_66.162954_pilon sw=shovill-spades/1.1.0 date=20230213:21156..22313:repUS40_1_repB(pE394)_KP399637:100.000000 | |
| 18 ATGCTCAATTCTAGTATATCACGAAAGGTACTTATGATGAATGACATTCAAAACAAAAAA | |
| 19 ATAGTTCAAGACAATGATTTAATTGTAAGTGTCGCAAAAATGGATAAGACACCCATGAAA | |
| 20 TTTTTTGAATTAGCAGTCGCCAGTTTAGATATTAAGAATATTCCTGCTGATCGAACTGTT | |
| 21 CATGTTTCTAAAGAATTATTGTATTCCTTCTTTGACGCAAAAAGTGAAAATAAACATACA | |
| 22 CGCTTTAAAGACGCTGTTCTAACTGTTCATGAGCAAGCAGTGTTTCTAATGCGAGAATTA | |
| 23 AATGAGCGCAAAGGAAAATATGAATATCAAGTGATTAGTCCATTGGAAAGAACTTCTTGG | |
| 24 AATGATTATGAAGATATTGTTTCTTTTAAGTTTACTGAATCTATTTTTCCGTATCTGATA | |
| 25 GATTTAAAAGGAACATACACGCAATATTTATTGTCAGACATTGCACAACTAAATAGCAAG | |
| 26 TATTCCATCATTATTTATAAATGGTTAAGCATGAATTATAACCAGTATGACTATTATAAT | |
| 27 GCAAAAGGTGGGCGCAGAGAAAAACAGTTAAATGAATATAAAAATCCAATTATTCCGATT | |
| 28 GAAGAATTACGAAGAATAACTGATACAGAAAAAGAGTATTTAAAATTTTCCAATTTTGAA | |
| 29 GCAAGAGTTTTAAAAAAAGCTGTTGAAGAAATCAACCAATTTACAGTTTTAAATGCGACG | |
| 30 TATGAAAAAATAAAAAAAGGAAACCGAATTGGTTCGATTCAGTTCCATATTACGAAAAAA | |
| 31 CAAATTGCTCCTAATCCTTCTTACAAAATTGGCGATTCTGTGTATGAAGCGCAACAAGCA | |
| 32 GAAAAAGAACAAAATCAAATTACTTTATTTGCGCAGGCAATGCAAAGTCAATACACTACC | |
| 33 ATTTTGATGGAAAATATGTTGATTGGGTACAAAGATATGCAAGATATTGAATTAATGGCA | |
| 34 AGCTTGCAAGAAATGGTTTATCCCTTGTATGACGAGTTGAAAACTCTTAGAGGATTAGAC | |
| 35 GGTGTGAGAAATCACTTAGAATACGTTTCAAGAAAACAAATAGGCTATTCTAAAACTAAT | |
| 36 ATTGTCAAGTATTTAAAAACAGCTATCACACAATATTTGCCAACGGTAAAAATGATGGAT | |
| 37 ATGGATAATAGAGTGTAA | |
| 38 >rep9b:WARNING ID:100.0% COV:100.0% Best_match:contig00023 len=45935 cov=46.6 corr=0 origname=NODE_23_length_45935_cov_46.624847_pilon sw=shovill-spades/1.1.0 date=20230213:3630..4643:rep9b_2_prgW(EF62pC)_CP002494:100.000000 | |
| 39 ATGAACGATTTTCAATTTATTTCAGCTAATGAAACCTATAGAAATTTGTATTACCAATTA | |
| 40 CCTAAAGTACTTTTTACATCAGAATTTTATAAGACTATGTCTAATGATAGTAAAATAGCT | |
| 41 TACGCAATGTTGCAAGACCGATGTGAATATTCAATACAAAATAATTGGATTGATCAAGAT | |
| 42 GGGCATATATATTTTATCTTTACACGAAATGAACTGATGGATATTTTAGGGTGTAAAGAA | |
| 43 AATAAAATTGCAAAAATAAAAAAAGAATTAAAAGACAAAAATTTACTTTATGAAAAACGT | |
| 44 ATTCCTCCGAAAAAACTCTCTACTGGTGAATTCAAAAACTATCCAAACAGATTGTATTTA | |
| 45 GGTAAGCTGGAAGTTTCAGCAACAGATGTTTACGCCATCAGTAATGCTAGCTATACAAAT | |
| 46 GAGTTTCCCGAAAGTGGGAAAAACCAACCTTCGGATAAACATGATAAAATCGGCATTTCT | |
| 47 TTCGAAAGTGGGAAAAACCAACGTCCAGAAGAATCCAATAATACCAGTACTTTGTTCGAA | |
| 48 AGTGGGAAAAACCAACCCAATCTATATCTAACTAATTCTTTAGATACAATAGATACAATA | |
| 49 GATACTGAAAAAGAACGATTGCAACAACAATTATTGCTCGATCAATTTTCAGAAGTTCAA | |
| 50 GAGCATACATTTCTTAGCAAAAATAGCTTAAAATTTATTGCTGCCTTTTCTGATACTATT | |
| 51 CAAGAAGCACATGAAATGGTTGGAACAATTATTCGTGCTAAAACTAAAGTAGAAAAAGAA | |
| 52 TACAATATCGTTCTAATTGGTGAAGATTATCAAGAAGAAATAGACAAATGTTTGCGTCGT | |
| 53 GTGATGCATAAAATCAAGACAGATTCTACTGTAAAAAGTCCAAAAGGCCTATTCTACAAG | |
| 54 TCGTTTTACAATTTATTTGTTGAATGTACAATAGAGAAAAAAAGTCATTTAAATAAAAAT | |
| 55 AGTACGGACAACACCCCAGAAATAACTACACATAACTGGATTGAGTATCAATAA | |
| 56 >rep7a:WARNING ID:100.0% COV:100.0% Best_match:contig00048 len=5336 cov=19.5 corr=0 origname=NODE_48_length_5336_cov_19.468228_pilon sw=shovill-spades/1.1.0 date=20230213:3276..4214:rep7a_8_ORF11(pRE25)_X92945:100.000000 | |
| 57 ATGAAGAAAATTGATGAAAAATTAGCTGCAGAAATCTCACTAAAAAAACCGGCCGTCTCT | |
| 58 AATAGCCGGTTAAGTAATAGCCGGTTAAGTGGTCAAACTTTGGGAAAATCTCAACCCGCA | |
| 59 TTAAGTTTTGATGCCATGACAATCGTTGGAAATTTGAACAAAACTAATGCTAAAAAGCTA | |
| 60 TCTGACTTTATGAGTGTAGAGCCACAAATACGACTTTGGGATATACTTCAAACAAAGTTT | |
| 61 AAAGCTAAGGCACTTCAAGAAAAAGTTTATATCGAATATGACAAAGTAAAAGCAGATACT | |
| 62 TGGGATAGACGTAATATGCGTGTTGAATTTAATCCCAATAAACTCACACATGAAGAAATG | |
| 63 ATTTGGTTAAAACAAAATATTATCGACTACATGGAAGATGACGGTTTTACAAGATTAGAC | |
| 64 TTAGCTTTTGATTTTGAAGATGATTTGAGCGATTACTATGCAATGACTGATAAAGCAGTT | |
| 65 AAGAAAACTGTTTTTTATGGTCGTAATGGCAAGCCAGAAACAAAATATTTTGGTGTCCGT | |
| 66 GATAGTGATAGATTTATTAGAATTTATAATAAAAAACAAGAACGTAAAGATAACGCAGAT | |
| 67 GTTGAAGTTGTGTCTGAACATTTATGGCGTGTAGAAGTTGAATTAAAAAGAGATATGGTT | |
| 68 GATTACTGGAATGATTGTTTTAATGATTTACACATCTTGAAACCTGCGTGGGCTACTTTA | |
| 69 GAAAAAATTAATGAGCAAGCTATGGTTTATACTTTGTTGCATGAAGAAAGTATGTGGGGA | |
| 70 AAGCTAAGTAAGAATACTAAGACTAAATTTAAAAAATTGATTAGAGAAATATCTCCAATT | |
| 71 GATTTAACGGAATTAATGAAATCGACTTTAAAAGCGAACGAAAAACAATTGCAAAAGCAG | |
| 72 ATTGATTTTTGGCAACGTGAATTTAGGTTTTGGAAGTAA | |
| 73 >repUS43:WARNING ID:100.0% COV:100.0% Best_match:contig00040 len=12074 cov=69.2 corr=0 origname=NODE_40_length_12074_cov_69.205993_pilon sw=shovill-spades/1.1.0 date=20230213:8225..9430:repUS43_1_CDS12738(DOp1)_CP003584:100.000000 | |
| 74 TTGGAGGGATTTTTACTGAATGAACAAACTTGGTTACAGCATTTAAAAGAAAAACGCTTG | |
| 75 GCTTATGGACTATCTCAAAACCGTTTAGCTGTTGCGACTGGTATTACAAGGCAGTATCTA | |
| 76 AGCGATATTGAAACAGGAAAAGTCAAGCCATCAGAGGATTTACAGCAGTCCCTTTGGGAA | |
| 77 GCTCTGGAACGCTTCAATCCCGACGCTCCCCTTGAAATGCTGTTTGATTATGTAAGAATT | |
| 78 CGCTTTCCGACAACAGACGTACAGCAGGTGGTCGAAAACATCTTACAACTGAAACTGTCC | |
| 79 TATTTTCTTCATGAGGACTATGGTTTCTATTCTTATTCAGAGCATTATGCTTTAGGCGAC | |
| 80 ATATTCGTCCTTTGCTCCCATGAACTGGACAAAGGAGTTCTGGTGGAATTGAAAGGTCGT | |
| 81 GGGTGCAGACAATTTGAAAGCTATCTTCTGGCACAACAAAGAAGCTGGTATGAGTTCTTT | |
| 82 ATGGACGTTTTGGTGGCTGGCGGTGTGATGAAACGCCTTGACCTTGCCATTAACGATAAG | |
| 83 ACAGGGATTTTAAATATCCCTGTACTCACTGAAAAGTGCCAACAGGAAGAATGTATCTCC | |
| 84 GTCTTCCGCAGTTTTAAAAGCTATCGCAGTGGCGAACTGGTACGCAAAGAGGAAAAGGAA | |
| 85 TGTATGGGAAACACCCTCTATATCGGTTCATTACAAAGTGAAGTTTATTTCTGTATCTAT | |
| 86 GAAAAGGACTACGAGCAGTACAAGAAAAATGATATTCCCATTGAAGACGCAGAAGTAAAA | |
| 87 AACCGTTTTGAGATTCGATTGAAAAATGAGCGTGCCTATTATGCAGTCCGTGATTTACTC | |
| 88 GTCTATGACAATCCAGAGCATACCGCCTTTAAAATTATCAATCGGTATATCCGTTTTGTA | |
| 89 GATAAAGACGATTCCAAACCTCGTTCTGATTGGAAACTGAATGAAGAATGGGCTTGGTTT | |
| 90 ATTGGGAACAATCGTGAACGATTAAAACTAACCACAAAACCAGAGCCTTACTCCTTCCAA | |
| 91 AGGACGCTGAACTGGCTATCTCATCAAGTTGCCCCGACCTTAAAGGTTGCGATTAAACTT | |
| 92 GATGAAATCAACCAGACGCAGGTTGTAAAAGACATTCTCGACCATGCGAAACTGACAGAC | |
| 93 CGACACAAGCAGATTTTGAAGCAACAGTCAGTAAAAGAACAGGACGTGATAACAACAAAA | |
| 94 AAATAA |