Mercurial > repos > ifb-elixirfr > abromics_galaxy_json_extractor

view test-data/summarize/tabular_file_output.json @ 6:089c8dda0782 draft

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planemo upload for repository https://gitlab.com/ifb-elixirfr/abromics/galaxy-tools commit e7d9e8f7411e216a9e5277803854d23dba615504
author ifb-elixirfr
date Sun, 15 Oct 2023 08:34:08 +0000
parents b77b0b1e6c74
children
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[{"analysis_software_name": "tabular_file", "reference_database_version": "", "analysis_software_version": "", "results": [{"name": "tabular_file_report", "file_path": "tests/data/dummy/tabular_file/report.tsv", "hid": "12345", "galaxy_hid": "", "content": [{"#FILE": "/storage/scratch/piemari/60579281/abricate/10_Enterococcus_faecalis_S17_L001.fasta", "SEQUENCE": "contig00002", "START": 142975, "END": 143985, "STRAND": "+", "GENE": "bopD", "COVERAGE": "1-1011/1011", "COVERAGE_MAP": "===============", "GAPS": "0/0", "%COVERAGE": 100.0, "%IDENTITY": 98.91, "DATABASE": "vfdb", "ACCESSION": "NP_814691", "PRODUCT": "(bopD)sugar-bindingtranscriptionalregulatorLacIfamily[BopD(VF0362)][EnterococcusfaecalisV583]", "RESISTANCE": null}, {"#FILE": "/storage/scratch/piemari/60579281/abricate/10_Enterococcus_faecalis_S17_L001.fasta", "SEQUENCE": "contig00003", "START": 7884, "END": 11111, "STRAND": "-", "GENE": "fss3", "COVERAGE": "1-3228/3228", "COVERAGE_MAP": "===============", "GAPS": "0/0", "%COVERAGE": 100.0, "%IDENTITY": 99.38, "DATABASE": "vfdb", "ACCESSION": "NP_815578", "PRODUCT": "(fss3)EnterococcusfaecalissurfaceproteinFss3fibrinogenbindingprotein[Fibrinogenbindingprotein(AI273)][EnterococcusfaecalisV583]", "RESISTANCE": null}]}], "tool_has_database": false}]