Mercurial > repos > imgteam > 2d_feature_extraction
comparison 2d_feature_extraction.py @ 1:f03b4da203d0 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/2d_feature_extraction/ commit e45ba62aae80d942bbf1cbf572bd9aec64297900
| author | imgteam |
|---|---|
| date | Tue, 09 Jul 2019 08:35:50 -0400 |
| parents | 96909b9d1df1 |
| children | 6fdb3542a406 |
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| 0:96909b9d1df1 | 1:f03b4da203d0 |
|---|---|
| 116 if args.solidity or args.all_features: | 116 if args.solidity or args.all_features: |
| 117 df['solidity'] = df['it'].map(lambda ait: regions[ait].solidity) | 117 df['solidity'] = df['it'].map(lambda ait: regions[ait].solidity) |
| 118 if args.moments or args.all_features: | 118 if args.moments or args.all_features: |
| 119 df['moments'] = df['it'].map(lambda ait: regions[ait].moments) | 119 df['moments'] = df['it'].map(lambda ait: regions[ait].moments) |
| 120 if args.convexity or args.all_features: | 120 if args.convexity or args.all_features: |
| 121 df['convexity'] = df.area/(df.perimeter*df.perimeter) | 121 perimeter = df['it'].map(lambda ait: regions[ait].perimeter) |
| 122 area = df['it'].map(lambda ait: regions[ait].area) | |
| 123 df['convexity'] = area/(perimeter*perimeter) | |
| 122 | 124 |
| 123 del df['it'] | 125 del df['it'] |
| 124 df.to_csv(out_file, sep='\t', line_terminator='\n', index=False) | 126 df.to_csv(out_file, sep='\t', line_terminator='\n', index=False) |