Mercurial > repos > imgteam > 2d_feature_extraction

changeset 2:6fdb3542a406 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/2d_feature_extraction/ commit b2acc1845a25828181597fe5b6982fe116a7796d
author imgteam
date Mon, 22 Jul 2019 04:59:39 -0400
parents f03b4da203d0
children 5791a7f65275
files 2d_feature_extraction.py 2d_feature_extraction.xml
diffstat 2 files changed, 4 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/2d_feature_extraction.py	Tue Jul 09 08:35:50 2019 -0400
+++ b/2d_feature_extraction.py	Mon Jul 22 04:59:39 2019 -0400
@@ -1,7 +1,6 @@
 import argparse
 import numpy as np
 import pandas as pd
-import tifffile
 import skimage.io
 import skimage.measure
 import skimage.feature
@@ -20,7 +19,7 @@
 features.add_argument('--max_intensity', dest='max_intensity', action='store_true')
 features.add_argument('--mean_intensity', dest='mean_intensity', action='store_true')
 features.add_argument('--min_intensity', dest='min_intensity', action='store_true')
-features.add_argument('--moments_hu', dest='moments_hu', action='store_true')
+features.add_argument('--moments_hu', dest='moments_hu', action='store_true') 
 features.add_argument('--centroid', dest='centroid', action='store_true')
 features.add_argument('--bbox', dest='bbox', action='store_true')
 features.add_argument('--area', dest='area', action='store_true')
--- a/2d_feature_extraction.xml	Tue Jul 09 08:35:50 2019 -0400
+++ b/2d_feature_extraction.xml	Mon Jul 22 04:59:39 2019 -0400
@@ -1,12 +1,12 @@
-<tool id="ip_2d_feature_extraction" name="2D Feature Extraction" version="0.0.9">
+<tool id="ip_2d_feature_extraction" name="2D Feature Extraction" version="0.1.1">
     <description>Feature Extraction</description>
-    <requirements>
+    <requirements> 
         <requirement type="package" version="0.23.4">pandas</requirement>
         <requirement type="package" version="0.14.2">scikit-image</requirement>
         <requirement type="package" version="1.15.4">numpy</requirement>
         <requirement type="package" version="0.15.1">tifffile</requirement>
     </requirements>
-    <command>
+    <command detect_errors="aggressive">
     <![CDATA[
     python '$__tool_directory__/2d_feature_extraction.py'
     #if $feature_options['features'] == 'all'