Mercurial > repos > imgteam > 2d_feature_extraction
changeset 1:f03b4da203d0 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/2d_feature_extraction/ commit e45ba62aae80d942bbf1cbf572bd9aec64297900
| author | imgteam |
|---|---|
| date | Tue, 09 Jul 2019 08:35:50 -0400 |
| parents | 96909b9d1df1 |
| children | 6fdb3542a406 |
| files | 2d_feature_extraction.py 2d_feature_extraction.xml |
| diffstat | 2 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/2d_feature_extraction.py Sat Feb 09 14:28:26 2019 -0500 +++ b/2d_feature_extraction.py Tue Jul 09 08:35:50 2019 -0400 @@ -118,7 +118,9 @@ if args.moments or args.all_features: df['moments'] = df['it'].map(lambda ait: regions[ait].moments) if args.convexity or args.all_features: - df['convexity'] = df.area/(df.perimeter*df.perimeter) + perimeter = df['it'].map(lambda ait: regions[ait].perimeter) + area = df['it'].map(lambda ait: regions[ait].area) + df['convexity'] = area/(perimeter*perimeter) del df['it'] df.to_csv(out_file, sep='\t', line_terminator='\n', index=False)
--- a/2d_feature_extraction.xml Sat Feb 09 14:28:26 2019 -0500 +++ b/2d_feature_extraction.xml Tue Jul 09 08:35:50 2019 -0400 @@ -1,4 +1,4 @@ -<tool id="ip_2d_feature_extraction" name="2D Feature Extraction" version="0.0.8"> +<tool id="ip_2d_feature_extraction" name="2D Feature Extraction" version="0.0.9"> <description>Feature Extraction</description> <requirements> <requirement type="package" version="0.23.4">pandas</requirement>