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comparison 2d_filter_segmentation_by_features.xml @ 1:6ad1d3cfdea1 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_filter_segmentation_by_features/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
author imgteam
date Mon, 13 Nov 2023 22:10:21 +0000
parents e576b73a2e2f
children 8f76184ca03f
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0:e576b73a2e2f 1:6ad1d3cfdea1
1 <tool id="ip_2d_filter_segmentation_by_features" name="Filter segmentation" version="0.0.1"> 1 <tool id="ip_2d_filter_segmentation_by_features" name="Filter label map by rules" version="0.0.1-2">
2 <description>Filter segmentation by rules</description> 2 <description></description>
3 <requirements> 3 <edam_operations>
4 <edam_operation>operation_3443</edam_operation>
5 </edam_operations>
6 <xrefs>
7 <xref type="bio.tools">galaxy_image_analysis</xref>
8 </xrefs>
9 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement> 10 <requirement type="package" version="0.14.2">scikit-image</requirement>
5 <requirement type="package" version="5.3.0">pillow</requirement> 11 <requirement type="package" version="5.3.0">pillow</requirement>
6 <requirement type="package" version="0.23.4">pandas</requirement> 12 <requirement type="package" version="0.23.4">pandas</requirement>
7 <requirement type="package" version="0.15.1">tifffile</requirement> 13 <requirement type="package" version="0.15.1">tifffile</requirement>
8 </requirements> 14 </requirements>
9 <command detect_errors="aggressive"> 15 <command detect_errors="aggressive">
10 <![CDATA[ 16 <![CDATA[
11 python '$__tool_directory__/2d_filter_segmentation_by_features.py' '$input' '$output' '$feature_file' '$rule_file' 17 python '$__tool_directory__/2d_filter_segmentation_by_features.py' '$input' '$output' '$feature_file' '$rule_file'
12 ]]> 18 ]]>
13 </command> 19 </command>
14 <inputs> 20 <inputs>
15 <param name="input" type="data" format="tiff" label="Source file" /> 21 <param name="input" type="data" format="tiff" label="Source file" />
16 <param name="feature_file" type="data" format="tabular" label="Feature file" /> 22 <param name="feature_file" type="data" format="tabular" label="Feature file" />
17 <param name="rule_file" type="data" format="tabular" label="Rules file" /> 23 <param name="rule_file" type="data" format="tabular" label="Rules file" />
18 </inputs> 24 </inputs>
19 <outputs> 25 <outputs>