Mercurial > repos > imgteam > 2d_histogram_equalization
view histogram_equalization.xml @ 1:77f7159d775a draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
author | imgteam |
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date | Mon, 13 Nov 2023 22:10:25 +0000 |
parents | 70316d792fc9 |
children | 3f3783846dc0 |
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<tool id="ip_histogram_equalization" name="Perform histogram equalization" version="0.0.1-2"> <description>with scikit-image</description> <edam_operations> <edam_operation>operation_3443</edam_operation> </edam_operations> <xrefs> <xref type="bio.tools">galaxy_image_analysis</xref> </xrefs> <requirements> <requirement type="package" version="0.14.2">scikit-image</requirement> <requirement type="package" version="1.15.4">numpy</requirement> <requirement type="package" version="5.3.0">pillow</requirement> <requirement type="package" version="0.15.1">tifffile</requirement> </requirements> <command detect_errors="aggressive"> <![CDATA[ python '$__tool_directory__/histogram_equalization.py' '$input' '$output' $h_type ]]> </command> <inputs> <param name="input" type="data" format="tiff" label="Source file" /> <param name="h_type" type="select" label="Histogram Equalization Algorithm"> <option value="default">Stretching</option> <option value="clahe" selected="True">CLAHE</option> </param> </inputs> <outputs> <data format="tiff" name="output" /> </outputs> <tests> <test> <param name="input" value="sample.tif"/> <output name="output" value="out.tif" ftype="tiff" compare="sim_size"/> <param name="h_type" value="default"/> </test> </tests> <help> Applies histogram equalization to an image. </help> <citations> <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> </citations> </tool>