Mercurial > repos > imgteam > 2d_histogram_equalization
changeset 3:b1c2c210813c draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit c86a1b93cb7732f7331a981d13465653cc1a2790
| author | imgteam |
|---|---|
| date | Wed, 24 Apr 2024 08:11:54 +0000 |
| parents | 3f3783846dc0 |
| children | |
| files | histogram_equalization.py histogram_equalization.xml |
| diffstat | 2 files changed, 6 insertions(+), 5 deletions(-) [+] |
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--- a/histogram_equalization.py Thu Apr 04 15:23:34 2024 +0000 +++ b/histogram_equalization.py Wed Apr 24 08:11:54 2024 +0000 @@ -1,6 +1,7 @@ import argparse import sys +import giatools.io import skimage.exposure import skimage.io import skimage.util @@ -17,7 +18,7 @@ parser.add_argument('h_type', choices=hOptions.keys(), help='histogram equalization method') args = parser.parse_args() - img_in = skimage.io.imread(args.input_file.name) + img_in = giatools.io.imread(args.input_file.name) res = hOptions[args.h_type](img_in) res = skimage.util.img_as_uint(res) skimage.io.imsave(args.out_file.name, res, plugin="tifffile")
--- a/histogram_equalization.xml Thu Apr 04 15:23:34 2024 +0000 +++ b/histogram_equalization.xml Wed Apr 24 08:11:54 2024 +0000 @@ -3,7 +3,7 @@ <macros> <import>creators.xml</import> <import>tests.xml</import> - <token name="@TOOL_VERSION@">0.14.2</token> + <token name="@TOOL_VERSION@">0.18.1</token> <token name="@VERSION_SUFFIX@">0</token> </macros> <creator> @@ -18,9 +18,9 @@ </xrefs> <requirements> <requirement type="package" version="@TOOL_VERSION@">scikit-image</requirement> - <requirement type="package" version="1.15.4">numpy</requirement> - <requirement type="package" version="5.3.0">pillow</requirement> - <requirement type="package" version="0.15.1">tifffile</requirement> + <requirement type="package" version="1.23.3">numpy</requirement> + <requirement type="package" version="2020.10.1">tifffile</requirement> + <requirement type="package" version="0.1">giatools</requirement> </requirements> <command detect_errors="aggressive"> <![CDATA[