# HG changeset patch
# User imgteam
# Date 1645283839 0
# Node ID be2d3ce89c0f0ebfdbc6c4318cae98bd69326a3d
# Parent  497dcd834bb3c3359a4d58b535bec53af50bc7bf
"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/2d_auto_local_threshold/ commit b1b3c63ab021aa77875c3b04127f6836024812f9"

diff -r 497dcd834bb3 -r be2d3ce89c0f auto_local_threshold.py
--- a/auto_local_threshold.py	Wed Dec 18 05:00:26 2019 -0500
+++ b/auto_local_threshold.py	Sat Feb 19 15:17:19 2022 +0000
@@ -1,9 +1,10 @@
 import argparse
 import sys
-import skimage.io
+
+import numpy as np
 import skimage.filters
+import skimage.io
 import skimage.util
-import numpy as np
 
 threshOptions = {
     'gaussian': lambda img_raw, bz: skimage.filters.threshold_local(img_raw, bz, method='gaussian'),
@@ -24,7 +25,7 @@
     img_in = np.reshape(img_in, [img_in.shape[0], img_in.shape[1]])
     thresh = threshOptions[args.thresh_type](img_in, args.block_size)
 
-    if args.dark_background: 
+    if args.dark_background:
         res = img_in > thresh
     else:
         res = img_in <= thresh
diff -r 497dcd834bb3 -r be2d3ce89c0f auto_local_threshold.xml
--- a/auto_local_threshold.xml	Wed Dec 18 05:00:26 2019 -0500
+++ b/auto_local_threshold.xml	Sat Feb 19 15:17:19 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="ip_localthreshold" name="Local Threshold" version="0.0.2"> 
+<tool id="ip_localthreshold" name="Local Threshold" version="0.0.3" profile="20.05"> 
    <description>applies a local threshold algorithm to an image</description> 
    <requirements>
         <requirement type="package" version="0.14.2">scikit-image</requirement>
@@ -35,6 +35,8 @@
     </tests>
     <help>
         Applies a local threshold algorithm to an image.
+
+        Note: This tool is deprecated and may not be supported in future. Please use the tool "Auto Threshold" instead.
     </help>
     <citations>
         <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>