Mercurial > repos > imgteam > 2d_simple_filter
diff filter_image.py @ 4:d51310ab328a draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_simple_filter/ commit c86a1b93cb7732f7331a981d13465653cc1a2790
author | imgteam |
---|---|
date | Wed, 24 Apr 2024 08:12:03 +0000 |
parents | 6c4b22ef2b81 |
children |
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--- a/filter_image.py Thu Apr 04 15:23:42 2024 +0000 +++ b/filter_image.py Wed Apr 24 08:12:03 2024 +0000 @@ -1,5 +1,6 @@ import argparse +import giatools.io import scipy.ndimage as ndi import skimage.io import skimage.util @@ -23,6 +24,6 @@ parser.add_argument('size', type=float, help='Size of the filter (e.g., radius, sigma)') args = parser.parse_args() - im = skimage.io.imread(args.input.name) + im = giatools.io.imread(args.input.name) res = filters[args.filter](im, args.size) skimage.io.imsave(args.output.name, res, plugin='tifffile')