Mercurial > repos > imgteam > 2d_simple_filter
view filter.xml @ 2:f70b215d155c draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_simple_filter/ commit 56e3f647d08d5e6c973d5e6cd89bb677db6473ab
author | imgteam |
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date | Fri, 10 Nov 2023 13:44:57 +0000 |
parents | dba87c4b32d3 |
children | 6c4b22ef2b81 |
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<tool id="ip_filter_standard" name="Filter 2D image" version="0.0.3-3"> <description>with scikit-image</description> <edam_operations> <edam_operation>operation_3443</edam_operation> </edam_operations> <xrefs> <xref type="bio.tools">scikit-image</xref> <xref type="biii">scikit-image</xref> </xrefs> <requirements> <requirement type="package" version="0.14.2">scikit-image</requirement> <requirement type="package" version="1.15.4">numpy</requirement> <requirement type="package" version="5.3.0">pillow</requirement> <requirement type="package" version="0.15.1">tifffile</requirement> </requirements> <command detect_errors="aggressive"> <![CDATA[ python '$__tool_directory__/filter_image.py' '$input' '$output' $filter_type $radius ]]> </command> <inputs> <param name="filter_type" type="select" label="Filter type"> <option value="median" selected="True">Median</option> <option value="gaussian">Gaussian Blur</option> <option value="prewitt">Prewitt</option> <option value="sobel">Sobel</option> <option value="scharr">Scharr</option> </param> <param name="radius" type="integer" value="3" label="Radius/Sigma" /> <param name="input" type="data" format="tiff" label="Source file" /> </inputs> <outputs> <data format="tiff" name="output" /> </outputs> <tests> <test> <param name="input" value="sample.tif" /> <output name="output" value="res.tif" ftype="tiff" compare="sim_size"/> <param name="filter_type" value="prewitt" /> <param name="radius" value="4" /> </test> </tests> <help> **What it does** Applies a standard filter to an image. </help> <citations> <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> </citations> </tool>