annotate binary2label.xml @ 2:6e65fd971e13 draft

"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binary2labelimage/ commit 3d389fdec0db29cf6fbd783c0501455bf624fa90"
author imgteam
date Wed, 18 Dec 2019 05:01:27 -0500
parents 6c92ac9ce868
children 9bb446db4a1e
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6c92ac9ce868 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binary2labelimage/ commit b2acc1845a25828181597fe5b6982fe116a7796d
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1 <tool id="ip_binary_to_labelimage" name="Binary 2 Label" version="0.4">
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2 <description>Converts Binary to Label Image</description>
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3 <requirements>
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4 <requirement type="package" version="0.12.3">scikit-image</requirement>
6c92ac9ce868 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binary2labelimage/ commit b2acc1845a25828181597fe5b6982fe116a7796d
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5 <requirement type="package" version="0.15.1">tifffile</requirement>
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6 </requirements>
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7 <command detect_errors="aggressive">
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8 <![CDATA[
b97a362ff321 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binary2labelimage/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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9 python '$__tool_directory__/binary2label.py' '$input' '$output'
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10 ]]>
b97a362ff321 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binary2labelimage/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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11 </command>
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12 <inputs>
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13 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Binary Image File"/>
b97a362ff321 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binary2labelimage/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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14 </inputs>
b97a362ff321 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binary2labelimage/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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15 <outputs>
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16 <data format="tiff" name="output"/>
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17 </outputs>
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18 <tests>
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19 <test>
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20 <param name="input" value="galaxyIcon_noText.tif" />
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6c92ac9ce868 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binary2labelimage/ commit b2acc1845a25828181597fe5b6982fe116a7796d
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21 <output name="output" value="label.tif" ftype="tiff" compare="sim_size"/>
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b97a362ff321 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binary2labelimage/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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22 </test>
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23 </tests>
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24 <help>
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25 **What it does**
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b97a362ff321 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binary2labelimage/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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27 This tool assigns every object an own grey value.
b97a362ff321 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binary2labelimage/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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28 </help>
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29 <citations>
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30 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
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31 </citations>
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32 </tool>