diff binary2label.py @ 1:6c92ac9ce868 draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binary2labelimage/ commit b2acc1845a25828181597fe5b6982fe116a7796d

--- a/binary2label.py	Sat Feb 09 14:30:31 2019 -0500
+++ b/binary2label.py	Mon Jul 22 05:01:35 2019 -0400
@@ -5,14 +5,16 @@
 import numpy as np
 import warnings
 from PIL import Image
+import skimage.util
 
 parser = argparse.ArgumentParser()
 parser.add_argument('input_file', type=argparse.FileType('r'), default=sys.stdin, help='input file')
 parser.add_argument('out_file', type=argparse.FileType('w'), default=sys.stdin, help='out file (TIFF)')
 args = parser.parse_args()
-
+ 
 img_in = skimage.io.imread(args.input_file.name) > 0
-res = label(img_in).astype(np.int32)
+res = label(img_in)
+res = skimage.util.img_as_uint(res)
 
 res = Image.fromarray(res)
-res.save(args.out_file.name, "tiff")
\ No newline at end of file
+res.save(args.out_file.name, "tiff")