# HG changeset patch
# User imgteam
# Date 1563786095 14400
# Node ID 6c92ac9ce8686b395db4f2838eeb3158f1f16b3d
# Parent  b97a362ff3213cd2237c97b1bf9dad0493f4e797
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binary2labelimage/ commit b2acc1845a25828181597fe5b6982fe116a7796d

diff -r b97a362ff321 -r 6c92ac9ce868 binary2label.py
--- a/binary2label.py	Sat Feb 09 14:30:31 2019 -0500
+++ b/binary2label.py	Mon Jul 22 05:01:35 2019 -0400
@@ -5,14 +5,16 @@
 import numpy as np
 import warnings
 from PIL import Image
+import skimage.util
 
 parser = argparse.ArgumentParser()
 parser.add_argument('input_file', type=argparse.FileType('r'), default=sys.stdin, help='input file')
 parser.add_argument('out_file', type=argparse.FileType('w'), default=sys.stdin, help='out file (TIFF)')
 args = parser.parse_args()
-
+ 
 img_in = skimage.io.imread(args.input_file.name) > 0
-res = label(img_in).astype(np.int32)
+res = label(img_in)
+res = skimage.util.img_as_uint(res)
 
 res = Image.fromarray(res)
-res.save(args.out_file.name, "tiff")
\ No newline at end of file
+res.save(args.out_file.name, "tiff")
diff -r b97a362ff321 -r 6c92ac9ce868 binary2label.xml
--- a/binary2label.xml	Sat Feb 09 14:30:31 2019 -0500
+++ b/binary2label.xml	Mon Jul 22 05:01:35 2019 -0400
@@ -1,9 +1,10 @@
-<tool id="ip_binary_to_labelimage" name="Binary 2 Label" version="0.2">
+<tool id="ip_binary_to_labelimage" name="Binary 2 Label" version="0.4"> 
     <description>Converts Binary to Label Image</description>
     <requirements>
-        <requirement type="package" version="0.12.3">scikit-image</requirement>
+        <requirement type="package" version="0.12.3">scikit-image</requirement> 
+        <requirement type="package" version="0.15.1">tifffile</requirement>
     </requirements>
-    <command>
+    <command detect_errors="aggressive">
         <![CDATA[
         python '$__tool_directory__/binary2label.py' '$input' '$output'
         ]]>
@@ -17,7 +18,7 @@
     <tests>
         <test>
             <param name="input" value="galaxyIcon_noText.tif" />
-            <output name="output" value="label.tif" ftype="tiff" />
+            <output name="output" value="label.tif" ftype="tiff" compare="sim_size"/>
         </test>
     </tests>
     <help>