# HG changeset patch
# User imgteam
# Date 1699913433 0
# Node ID 9bb446db4a1e079c218bbabbd7a1314552f3e103
# Parent  6e65fd971e13ee99659bb7236e63e5a0280eac21
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binary2labelimage/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf

diff -r 6e65fd971e13 -r 9bb446db4a1e binary2label.py
--- a/binary2label.py	Wed Dec 18 05:01:27 2019 -0500
+++ b/binary2label.py	Mon Nov 13 22:10:33 2023 +0000
@@ -1,17 +1,16 @@
 import argparse
 import sys
+
 import skimage.io
+import skimage.util
+from PIL import Image
 from skimage.measure import label
-import numpy as np
-import warnings
-from PIL import Image
-import skimage.util
 
 parser = argparse.ArgumentParser()
 parser.add_argument('input_file', type=argparse.FileType('r'), default=sys.stdin, help='input file')
-parser.add_argument('out_file', type=argparse.FileType('w'), default=sys.stdin, help='out file (TIFF)') 
+parser.add_argument('out_file', type=argparse.FileType('w'), default=sys.stdin, help='out file (TIFF)')
 args = parser.parse_args()
- 
+
 img_in = skimage.io.imread(args.input_file.name) > 0
 res = label(img_in)
 res = skimage.util.img_as_uint(res)
diff -r 6e65fd971e13 -r 9bb446db4a1e binary2label.xml
--- a/binary2label.xml	Wed Dec 18 05:01:27 2019 -0500
+++ b/binary2label.xml	Mon Nov 13 22:10:33 2023 +0000
@@ -1,5 +1,11 @@
-<tool id="ip_binary_to_labelimage" name="Binary 2 Label" version="0.4"> 
-    <description>Converts Binary to Label Image</description>
+<tool id="ip_binary_to_labelimage" name="Convert binary image to label map" version="0.4-2"> 
+    <description></description>
+    <edam_operations>
+        <edam_operation>operation_3443</edam_operation>
+    </edam_operations>
+    <xrefs>
+        <xref type="bio.tools">galaxy_image_analysis</xref>
+    </xrefs>
     <requirements>
         <requirement type="package" version="0.12.3">scikit-image</requirement> 
         <requirement type="package" version="0.15.1">tifffile</requirement>