Mercurial > repos > imgteam > bioformats2raw
annotate test-data/xyz_8bit__mitotic_plate_calibrated.ome.zarr/0/.zattrs @ 2:1b3e7d53cec6 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/bioformats2raw commit ae73350d8f8f232cf598bbcf411778dc1de594f6
author | imgteam |
---|---|
date | Mon, 26 Feb 2024 20:01:43 +0000 |
parents | 4b6c2135e547 |
children |
rev | line source |
---|---|
0
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
1 { |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
2 "multiscales" : [ { |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
3 "metadata" : { |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
4 "method" : "loci.common.image.SimpleImageScaler", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
5 "version" : "Bio-Formats 6.13.0" |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
6 }, |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
7 "axes" : [ { |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
8 "unit" : "second", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
9 "name" : "t", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
10 "type" : "time" |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
11 }, { |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
12 "name" : "c", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
13 "type" : "channel" |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
14 }, { |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
15 "unit" : "micrometer", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
16 "name" : "z", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
17 "type" : "space" |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
18 }, { |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
19 "unit" : "micrometer", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
20 "name" : "y", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
21 "type" : "space" |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
22 }, { |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
23 "unit" : "micrometer", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
24 "name" : "x", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
25 "type" : "space" |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
26 } ], |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
27 "name" : "xyz_8bit__mitotic_plate_calibrated.tif", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
28 "datasets" : [ { |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
29 "path" : "0", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
30 "coordinateTransformations" : [ { |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
31 "scale" : [ 1.0, 1.0, 3.0, 0.08519643016734027, 0.08519643016734027 ], |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
32 "type" : "scale" |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
33 } ] |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
34 }, { |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
35 "path" : "1", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
36 "coordinateTransformations" : [ { |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
37 "scale" : [ 1.0, 1.0, 3.0, 0.17039286033468054, 0.17039286033468054 ], |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
38 "type" : "scale" |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
39 } ] |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
40 } ], |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
41 "version" : "0.4" |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
42 } ], |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
43 "omero" : { |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
44 "channels" : [ { |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
45 "color" : "808080", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
46 "coefficient" : 1, |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
47 "active" : true, |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
48 "label" : "Channel 0", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
49 "window" : { |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
50 "min" : 3.0, |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
51 "max" : 162.0, |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
52 "start" : 3.0, |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
53 "end" : 162.0 |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
54 }, |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
55 "family" : "linear", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
56 "inverted" : false |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
57 } ], |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
58 "rdefs" : { |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
59 "defaultT" : 0, |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
60 "model" : "greyscale", |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
61 "defaultZ" : 3 |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
62 } |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
63 } |
4b6c2135e547
planemo upload for repository https://github.com/Euro-BioImaging/Galaxy-OME-Zarr/tree/main/tools/bioformats2raw commit f7ffeafe5d1fd78de014c7dfda75f000f9e2e5d1
imgteam
parents:
diff
changeset
|
64 } |