view colocalization_viz.xml @ 3:0f8652663a03 draft default tip

"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/colocalization_viz/ commit 0500f513ee291ae0f6fad32a0b4fad05cd59cb71"

<tool id="ip_colocalization" name="Colocalization" version="0.0.9" profile="20.05">
    <description>of two segmentation maps</description>
    <requirements>
        <requirement type="package" version="0.14.2">scikit-image</requirement>
        <requirement type="package" version="1.15.4">numpy</requirement>
        <requirement type="package" version="5.3.0">pillow</requirement>
        <requirement type="package" version="0.15.1">tifffile</requirement>
    </requirements>
    <command detect_errors="aggressive">
    <![CDATA[
        python '$__tool_directory__/colocalization_viz.py' '$input_mask1' '$input_mask2' ./out.png
    ]]> 
    </command>
    <inputs>
        <param name="input_mask1" type="data" format="tiff" label="Mask1 Source File" />
        <param name="input_mask2" type="data" format="tiff" label="Mask2 Source File" />
    </inputs>
    <outputs>
        <data format="png" name="output" from_work_dir="out.png"/>
    </outputs>
    <tests>
        <test>
            <param name="input_mask1" value="sample1.tiff"/>
            <param name="input_mask2" value="sample2.tiff"/>
            <output name="output" value="out.png" ftype="png" compare="sim_size"/>
        </test>
    </tests>
    <help>
    **What it does**

    This tool overlays two segmentation maps and displays the colocalization results.

    Note: This tool is deprecated and may not be supported in future. Please use the tool "Overlay Images" instead.
    </help>
    <citations>
        <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
    </citations>
</tool>