# HG changeset patch
# User imgteam
# Date 1645895622 0
# Node ID 0f8652663a03fbc509953a025a1faca5e5bc1b74
# Parent  c73332d5c3bb7d66dacffce27bbbe43c6f50c7b2
"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/colocalization_viz/ commit 0500f513ee291ae0f6fad32a0b4fad05cd59cb71"

diff -r c73332d5c3bb -r 0f8652663a03 colocalization_viz.py
--- a/colocalization_viz.py	Wed Dec 18 05:01:42 2019 -0500
+++ b/colocalization_viz.py	Sat Feb 26 17:13:42 2022 +0000
@@ -1,13 +1,14 @@
-import skimage.io
-import skimage.color
-from skimage import img_as_uint
-from skimage.exposure import equalize_adapthist
-import numpy as np
 import argparse
 import sys
 
+import numpy as np
+import skimage.color
+import skimage.io
+from skimage import img_as_uint
+from skimage.exposure import equalize_adapthist
 
-# TODO make importable by python script 
+
+# TODO make importable by python script
 def readImg(path):
     img = skimage.io.imread(path)
 
diff -r c73332d5c3bb -r 0f8652663a03 colocalization_viz.xml
--- a/colocalization_viz.xml	Wed Dec 18 05:01:42 2019 -0500
+++ b/colocalization_viz.xml	Sat Feb 26 17:13:42 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="ip_colocalization" name="Colocalization" version="0.0.8">
+<tool id="ip_colocalization" name="Colocalization" version="0.0.9" profile="20.05">
     <description>of two segmentation maps</description>
     <requirements>
         <requirement type="package" version="0.14.2">scikit-image</requirement>
@@ -29,6 +29,8 @@
     **What it does**
 
     This tool overlays two segmentation maps and displays the colocalization results.
+
+    Note: This tool is deprecated and may not be supported in future. Please use the tool "Overlay Images" instead.
     </help>
     <citations>
         <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>