comparison concat_channels.py @ 4:2592a29a785e draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/concat_channels/ commit c86a1b93cb7732f7331a981d13465653cc1a2790

3:4c43875c790c

import argparse

import numpy as np
import skimage.io
import skimage.util


def concat_channels(input_image_paths, output_image_path, axis, preserve_values):
    images = []
    for image_path in input_image_paths:

        raw_image = skimage.io.imread(image_path)
        if len(raw_image.shape) == 2:
            if axis == 0:
                raw_image = [raw_image]
            else:
                raw_image = np.expand_dims(raw_image, 2)

4:2592a29a785e

import argparse

import giatools.io
import numpy as np
import skimage.io
import skimage.util


def concat_channels(input_image_paths, output_image_path, axis, preserve_values):
    images = []
    for image_path in input_image_paths:

        raw_image = giatools.io.imread(image_path)
        if len(raw_image.shape) == 2:
            if axis == 0:
                raw_image = [raw_image]
            else:
                raw_image = np.expand_dims(raw_image, 2)