Mercurial > repos > imgteam > concat_channels
changeset 4:2592a29a785e draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/concat_channels/ commit c86a1b93cb7732f7331a981d13465653cc1a2790
| author | imgteam |
|---|---|
| date | Wed, 24 Apr 2024 08:12:22 +0000 |
| parents | 4c43875c790c |
| children | |
| files | concat_channels.py concat_channels.xml |
| diffstat | 2 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/concat_channels.py Thu Apr 04 15:25:29 2024 +0000 +++ b/concat_channels.py Wed Apr 24 08:12:22 2024 +0000 @@ -1,5 +1,6 @@ import argparse +import giatools.io import numpy as np import skimage.io import skimage.util @@ -9,7 +10,7 @@ images = [] for image_path in input_image_paths: - raw_image = skimage.io.imread(image_path) + raw_image = giatools.io.imread(image_path) if len(raw_image.shape) == 2: if axis == 0: raw_image = [raw_image]
--- a/concat_channels.xml Thu Apr 04 15:25:29 2024 +0000 +++ b/concat_channels.xml Wed Apr 24 08:12:22 2024 +0000 @@ -1,4 +1,4 @@ -<tool id="ip_concat_channels" name="Concatenate images or channels" version="0.3-0" profile="20.05"> +<tool id="ip_concat_channels" name="Concatenate images or channels" version="0.3-1" profile="20.05"> <description></description> <macros> <import>creators.xml</import> @@ -17,6 +17,7 @@ <requirement type="package" version="0.18.3">scikit-image</requirement> <requirement type="package" version="1.24.1">numpy</requirement> <requirement type="package" version="2021.7.2">tifffile</requirement> + <requirement type="package" version="0.1">giatools</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[