diff coordinates_of_roi.xml @ 0:0d30ffea8874 draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/coordinates_of_roi/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/coordinates_of_roi.xml	Sat Feb 09 14:33:43 2019 -0500
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+<tool id="ip_coordinates_of_roi" name="Coordinates of ROI" version="0.0.3">
+    <description></description>
+    <requirements>
+        <requirement type="package" version="0.14.2">scikit-image</requirement>
+        <requirement type="package" version="0.23.4">pandas</requirement>
+    </requirements>
+    <command detect_errors="aggressive">
+        <![CDATA[
+            python '$__tool_directory__/coordinates_of_roi.py'
+            '$im'
+            '$pixel_table'
+            $offset_x $offset_y
+            $white_obj
+            --threshold $threshold
+        ]]>
+    </command>
+    <inputs>
+        <param name="im" type="data" format="png" label="Source file" />
+        <param name="white_obj" type="boolean" truevalue="--white_obj" falsevalue="" checked="false"
+            label="Set to Yes if object is white and background black, otherwise set to No" />
+        <param name="threshold" type="float" value="0.5" label="Threshold value" />
+        <param name="offset_x" type="integer" value="0" label="Added offset in x direction (=width direction)" />
+        <param name="offset_y" type="integer" value="0" label="Added offset in y direction (=height direction)" />
+    </inputs>
+    <outputs>
+       <data format="tabular" name="pixel_table" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="im" value="test.png"/>
+            <param name="white_obj" value="true"/>
+            <output name="pixel_table" value="table.tsv" ftype="tabular"/>
+        </test>
+        <test>
+            <param name="im" value="test.png"/>
+            <param name="white_obj" value="true"/>
+            <param name="offset_x" value="1"/>
+            <param name="offset_y" value="2"/>
+            <output name="pixel_table" value="table2.tsv" ftype="tabular"/>
+        </test>
+    </tests>
+    <help>
+    **What it does**
+
+    This tool creates a table containing the pixelcoordinates of the Region of Interest (ROI).
+    </help>
+    <citations>
+        <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
+    </citations>
+</tool>