Mercurial > repos > imgteam > coordinates_of_roi

diff coordinates_of_roi.py @ 2:24d9bd16c953 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/coordinates_of_roi/ commit bfae746780819634a014388ea4671a49fc5c178d
author imgteam
date Wed, 20 Mar 2019 09:18:06 -0400
parents ee045a6bbdef
children 02a686fc1654
line wrap: on
line diff
--- a/coordinates_of_roi.py	Fri Feb 22 17:11:28 2019 -0500
+++ b/coordinates_of_roi.py	Wed Mar 20 09:18:06 2019 -0400
@@ -16,11 +16,11 @@
         for i in range(img_height):
             if white_obj == False:
                 if data[i,j] <= threshold:
-                    x.append(j + offset[0])
-                    y.append(img_height-(i+1) + offset[1])
+                    x.append(i + offset[0])
+                    y.append(j + offset[1])
             elif data[i,j] >= threshold:
-                    x.append(j + offset[0])
-                    y.append(img_height-(i+1) + offset[1])
+                    x.append(i + offset[0])
+                    y.append(j + offset[1])
                     
     df = pd.DataFrame()
     df['x'] = x