diff count_objects.xml @ 0:895a29ebd0c7 draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/count_objects.xml	Sat Feb 09 14:34:18 2019 -0500
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+<tool id="ip_count_objects" name="Count Objects" version="0.0.4">
+    <description>in labled images</description>
+    <requirements>
+        <requirement type="package" version="0.14.2">scikit-image</requirement>
+        <requirement type="package" version="1.15.4">numpy</requirement>
+    </requirements>
+    <command>
+    <![CDATA[
+        python '$__tool_directory__/count_objects.py' '$input' '$output'
+    ]]>
+    </command>
+    <inputs>
+        <param name="input" type="data" format="tiff" label="Source file" />
+    </inputs>
+    <outputs>
+        <data format="tabular" name="output" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" value="input.tiff"/>
+            <output name="output" value="table.tsv" ftype="tabular"/>
+        </test>
+    </tests>
+    <help>
+    **What it does**
+
+    This tool counts objects in a labeled image.
+    </help>
+    <citations>
+        <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
+    </citations>
+</tool>