Mercurial > repos > imgteam > count_objects
view count_objects.xml @ 1:664232d2a3f7 draft
"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/count_objects/ commit 3d389fdec0db29cf6fbd783c0501455bf624fa90"
author | imgteam |
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date | Wed, 18 Dec 2019 05:01:56 -0500 |
parents | 895a29ebd0c7 |
children | 5bf8eb50b280 |
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<tool id="ip_count_objects" name="Count Objects" version="0.0.4"> <description>in labled images</description> <requirements> <requirement type="package" version="0.14.2">scikit-image</requirement> <requirement type="package" version="1.15.4">numpy</requirement> <requirement type="package" version="0.15.1">tifffile</requirement> </requirements> <command> <![CDATA[ python '$__tool_directory__/count_objects.py' '$input' '$output' ]]> </command> <inputs> <param name="input" type="data" format="tiff" label="Source file" /> </inputs> <outputs> <data format="tabular" name="output" /> </outputs> <tests> <test> <param name="input" value="input.tiff"/> <output name="output" value="table.tsv" ftype="tabular"/> </test> </tests> <help> **What it does** This tool counts objects in a labeled image. </help> <citations> <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> </citations> </tool>