Mercurial > repos > imgteam > detection_viz

comparison detection_viz.py @ 3:cb2d9de888a1 draft

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"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/detection_viz/ commit 3d389fdec0db29cf6fbd783c0501455bf624fa90"
author imgteam
date Wed, 18 Dec 2019 05:02:11 -0500
parents ec1ca4d62192
children 99433164b593
comparison
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2:f46f64f9590d 3:cb2d9de888a1
19 19
20 def detection_viz(input_file, output_file, tp=None, fn=None, fp=None, stroke_size=3, circle_radius=50): 20 def detection_viz(input_file, output_file, tp=None, fn=None, fp=None, stroke_size=3, circle_radius=50):
21 img = skimage.io.imread(input_file) 21 img = skimage.io.imread(input_file)
22 22
23 fig = plt.figure(figsize=(40, 40)) 23 fig = plt.figure(figsize=(40, 40))
24 ax = fig.add_axes([0, 0, 1, 1]) 24 ax = fig.add_axes([0, 0, 1, 1])
25 ax.axis('off') 25 ax.axis('off')
26 26
27 plt.imshow(img) 27 plt.imshow(img)
28 if tp is not None: 28 if tp is not None:
29 plot_circles(tp, ax, '#00FF00', stroke_size, circle_radius) 29 plot_circles(tp, ax, '#00FF00', stroke_size, circle_radius)