view image_info.xml @ 2:236ec78b2e53 draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_info/ commit 6b687746bdb3d5d1fb11ecffd6dd1bf42dc2c38d

<tool id="ip_imageinfo" name="Show image info" version="5.7.1">
  <description>with Bioformats</description>
  <edam_operations>
    <edam_operation>operation_3443</edam_operation>
  </edam_operations>
  <xrefs>
    <xref type="biii">python-bioformats</xref>
  </xrefs>
  <requirements>
        <requirement type="package" version="5.7.1">bftools</requirement>
  </requirements>
  <command> 
        <![CDATA[
        showinf '$input_file' -no-upgrade -minmax -nopix > '$output'
        ]]>
  </command>
  <inputs>
    <param label="Input Image" name="input_file" type="data" format="atsf,scn,ali,labels,ffr,jpeg,ndpi,tf8,pty,fff,mnc,vms,mng,xml,pcx,img,pct,ims,bip,ome.xml,bin,flex,his,hdr,mov,psd,spi,ipl,dv,aiix,j2kr,pst,mod,ome.tif,tif,obf,dib,dic,im3,tga,pbm,c01,crw,mrcs,l2d,seq,mdb,cfg,htm,mvd2,arf,vsi,companion.ome,htd,aim,fts,ndpis,r3d.log,nef,res,jpx,ics,rec,nd2,cr2,dcm,mea,ome,lei,lms,j2k,oib,mtb,ima,ets,wlz,pict,sm3,sm2,nrrd,xdce,acff,al3d,zvi,1sc,xys,tiff,pgm,pcoraw,ppm,ipm,set,cxd,ipw,apl,fake,tnb,txt,xv,tf2,ps,log,zip,epsi,j2ki,dicom,top,msr,frm,hed,gif,dm2,dm3,dm4,zpo,wav,wat,2fl,sdt,liff,hx,pic,ome.btf,am,bmp,pnl,r3d_d3d,jpf,png,tfr,dti,nii.gz,cif,fdf,grey,df3,stk,fli,hdf,btf,stp,ch5,v,sld,ids,dv.log,jpk,mrw,r3d,xlog,ano,jpe,sxm,jpg,vws,raw,czi,spl,avi,ome.tf8,inf,spc,ome.tf2,spe,lsm,afm,lif,naf,afi,inr,lim,nd,tim,html,sif,env,tif,csv,map,nii,gel,ome.tiff,oif,par,amiramesh,pr3,fits,lut,jp2,oir,dat,aisf,zfr,zfp,xqd,eps,xqf,st,nhdr,i2i,thm,exp,svs,mrc"/>
  </inputs>
  <outputs>
     <data format="txt" name="output"/>
  </outputs>
  <tests>
        <test>
            <param name="input_file" value="input.tiff" />
            <output name="output" value="res.txt" ftype="txt" compare="diff" lines_diff="6"/>
        </test>
  </tests>    
  <help>
    **What it does**

    Extracts metadata from an image.
    </help>
    <citations>
        <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
    </citations>
</tool>